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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343516 (71 seq.)
>W1710865595
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
1301475
1301403
-
Arg
CCT
[ENA]
¡û
>W1710874712
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
622192
622118
-
Arg
CCT
[ENA]
¡û
>W1710876078
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
653356
653282
-
Arg
CCT
[ENA]
¡û
>W131235261
AULK01000005
Actinomycetota
Gryllotalpicola ginsengisoli DSM 22003 [AULK]
25561
25486
-
Arg
CCT
[ENA]
¡û
>W1711357424
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
418128
418200
+
Arg
CCT
[ENA]
¡û
>W1711357600
MDHK01000096
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
82835
82761
-
Arg
CCT
[ENA]
¡û
>W1711360684
MDJW01000004
Actinomycetota
Clavibacter michiganensis [MDJW]
20613
20687
+
Arg
CCT
[ENA]
¡û
>W1711360795
MDJY01000044
Actinomycetota
Clavibacter michiganensis [MDJY]
105479
105405
-
Arg
CCT
[ENA]
¡û
>W1711360841
MDJZ01000011
Actinomycetota
Clavibacter michiganensis [MDJZ]
93622
93548
-
Arg
CCT
[ENA]
¡û
>W1711385627
MEEK01000011
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
7524
7599
+
Arg
CCT
[ENA]
¡û
>W1711461060
MJGM01000001
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
663718
663792
+
Arg
CCT
[ENA]
¡û
>W1711461381
MJGT01000002
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
39722
39650
-
Arg
CCT
[ENA]
¡û
>W1711461557
MJGX01000035
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
47094
47166
+
Arg
CCT
[ENA]
¡û
>C171111576
CP020715
Actinomycetota
Cnuibacter physcomitrellae [CP020715]
1162966
1163040
+
Arg
CCT
-
¡û
>WENV180018347
FSYX01000164
[FSYX] metagenome; soil
2894
2822
-
Arg
CCT
[ENA]
¢þ
>WENV180026305
FTIT01001216
[FTIT] metagenome; soil
11886
11958
+
Arg
CCT
[ENA]
¢þ
>WENV180028929
FTJH01492466
[FTJH] metagenome; soil
92
20
-
Arg
CCT
[ENA]
¢þ
>WENV180097673
MTBK01203365
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
170
242
+
Arg
CCT
[ENA]
¢þ
>WENV180101093
OAOU01000444
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1719
1647
-
Arg
CCT
[ENA]
¢þ
>WENV180359235
OBNR01022607
[OBNR] marine metagenome; Seawater_00002010_00002149
380
308
-
Arg
CCT
[ENA]
¢þ
>WENV180380333
OBOQ01029467
[OBOQ] marine metagenome; Fridge
301
229
-
Arg
CCT
[ENA]
¢þ
>WENV181234785
OFEU01008605
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
134
62
-
Arg
CCT
[ENA]
¢þ
>W141212771
AZQZ01000002
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
30054
29980
-
Arg
CCT
[ENA]
¡û
>WENV183636072
OOJJ01051942
[OOJJ] human gut metagenome; mucous membran biopsy from the gut
248
176
-
Arg
CCT
[ENA]
¢þ
>WENV183735168
PJUA01001673
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3024
2952
-
Arg
CCT
[ENA]
¢þ
>WENV170119268
CENJ01127869
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
296
368
+
Arg
CCT
[ENA]
¢þ
>WENV170228450
CEQG01012321
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5624
5696
+
Arg
CCT
[ENA]
¢þ
>WENV170232403
CEQI01057515
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2495
2567
+
Arg
CCT
[ENA]
¢þ
>WENV170379368
CETV01120897
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
75039
75113
+
Arg
CCT
[ENA]
¢þ
>WENV170713521
LNFM01033710
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2054
2128
+
Arg
CCT
[ENA]
¢þ
>WENV170923083
MDTG01042765
[MDTG] marine metagenome; seawater
1209
1283
+
Arg
CCT
[ENA]
¢þ
>WENV170935543
MDTG01258941
[MDTG] marine metagenome; seawater
14
88
+
Arg
CCT
[ENA]
¢þ
>WENV170938582
MDTG01311335
[MDTG] marine metagenome; seawater
6580
6654
+
Arg
CCT
[ENA]
¢þ
>C181001432
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
656297
656369
+
Arg
CCT
-
¡û
>C181196603
CP031192
Actinomycetota
Humibacter sp. BT305 [CP031192]
3253605
3253532
-
Arg
CCT
-
¡û
>C191056084
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
2299870
2299797
-
Arg
CCT
-
¡û
>C191071504
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
3641449
3641521
+
Arg
CCT
-
¡û
>C191100984
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2136392
2136464
+
Arg
CCT
-
¡û
>C191122399
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
1211550
1211477
-
Arg
CCT
-
¡û
>C191158804
CP038266
Actinomycetota
Microbacterium wangchenii dk512 [CP038266]
2628597
2628669
+
Arg
CCT
-
¡û
>W1910839685
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
1940490
1940417
-
Arg
CCT
[ENA]
¡û
>W1910839725
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1469767
1469694
-
Arg
CCT
[ENA]
¡û
>W1910839858
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1725533
1725460
-
Arg
CCT
[ENA]
¡û
>W1911075329
NMUN01000005
Actinomycetota
Microbacterium sp. BR1 [NMUN]
311916
311844
-
Arg
CCT
[ENA]
¡û
>W1911681958
QKLB01000007
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
51830
51757
-
Arg
CCT
[ENA]
¡û
>W1911685163
QKSG01000003
Actinomycetota
Curtobacterium sp. MCPF17_031 [QKSG]
358145
358219
+
Arg
CCT
[ENA]
¡û
>W1911685453
QKTK01000015
Actinomycetota
Curtobacterium sp. MCBD17_008 [QKTK]
30282
30355
+
Arg
CCT
[ENA]
¡û
>W1911685600
QKTN01000003
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
305772
305846
+
Arg
CCT
[ENA]
¡û
>W1911685734
QKTQ01000004
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
65772
65698
-
Arg
CCT
[ENA]
¡û
>W1911685880
QKTT01000009
Actinomycetota
Curtobacterium sp. MCBD17_019 [QKTT]
59032
59106
+
Arg
CCT
[ENA]
¡û
>W1911748158
QWDZ01000173
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
1896
1822
-
Arg
CCT
[ENA]
¡û
>W1810121366
PHUH01000001
Actinomycetota
Microcella sp. HL-107 [PHUH]
1406311
1406239
-
Arg
CCT
[ENA]
¡û
>W1810242579
PPXD01000001
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
271094
271167
+
Arg
CCT
[ENA]
¡û
>W1810277277
PSTS01000005
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
137420
137347
-
Arg
CCT
[ENA]
¡û
>W1810282098
PSXY01000040
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
21516
21589
+
Arg
CCT
[ENA]
¡û
>W1810586223
QFFE01000006
Actinomycetota
Microbacterium sp. KCTC 39802 [QFFE]
201602
201530
-
Arg
CCT
[ENA]
¡û
>W1810675542
QKLF01000007
Actinomycetota
Curtobacterium sp. MCJR17_055 [QKLF]
52697
52624
-
Arg
CCT
[ENA]
¡û
>W1810681228
QKSR01000011
Actinomycetota
Curtobacterium sp. MCSS17_015 [QKSR]
13300
13374
+
Arg
CCT
[ENA]
¡û
>W1810860821
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1578612
1578685
+
Arg
CCT
[ENA]
¡û
>W1810861604
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
2878115
2878188
+
Arg
CCT
[ENA]
¡û
>W1511352460
JROD01000015
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
96556
96482
-
Arg
CCT
[ENA]
¡û
>W1511432365
JUGL01000015
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
147772
147846
+
Arg
CCT
[ENA]
¡û
>W1511528979
JYJA01000032
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
169005
168930
-
Arg
CCT
[ENA]
¡û
>W1610068338
BCRG01000003
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
74449
74521
+
Arg
CCT
[ENA]
¡û
>W1610620626
LHOZ01000080
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
15474
15400
-
Arg
CCT
[ENA]
¡û
>W1610727941
LMGU01000001
Actinomycetota
Microbacterium sp. Root61 [LMGU]
1301475
1301403
-
Arg
CCT
[ENA]
¡û
>W1610737058
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
622192
622118
-
Arg
CCT
[ENA]
¡û
>W1610738424
LMOX01000003
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
653356
653282
-
Arg
CCT
[ENA]
¡û
>W1710065711
BCRG01000003
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
74449
74521
+
Arg
CCT
[ENA]
¡û
>W1710608051
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
320056
320130
+
Arg
CCT
[ENA]
¡û
>W1710748320
LHOZ01000080
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
15474
15400
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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