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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343542 (126 seq.)
>W1710946482
LORZ01000001
Bacillota
Staphylococcus capitis [LORZ]
1177924
1177996
+
Arg
CCG
[ENA]
¡û
>W1711076122
LSKZ01000005
Bacillota
Staphylococcus capitis [LSKZ]
154262
154190
-
Arg
CCG
[ENA]
¡û
>W1711076149
LSLA01000004
Bacillota
Staphylococcus capitis [LSLA]
258913
258841
-
Arg
CCG
[ENA]
¡û
>W1711098117
LTJH01000022
Bacillota
Staphylococcus sp. HMSC055A09 [LTJH]
178298
178226
-
Arg
CCG
[ENA]
¡û
>W1711101079
LTMG01000126
Bacillota
Staphylococcus sp. HMSC62A08 [LTMG]
55853
55924
+
Arg
CCG
[ENA]
¡û
>W1711104007
LTPG01000058
Bacillota
Staphylococcus sp. HMSC067F07 [LTPG]
268283
268355
+
Arg
CCG
[ENA]
¡û
>W1711105996
LTRJ01000026
Bacillota
Staphylococcus sp. HMSC036D05 [LTRJ]
41798
41869
+
Arg
CCG
[ENA]
¡û
>W1711111682
LTWR01000062
Bacillota
Staphylococcus sp. HMSC066C03 [LTWR]
19285
19356
+
Arg
CCG
[ENA]
¡û
>W1711173087
LWCP01000024
Bacillota
Staphylococcus capitis [LWCP]
37141
37213
+
Arg
CCG
[ENA]
¡û
>W1711173148
LWCQ01000026
Bacillota
Staphylococcus capitis [LWCQ]
150917
150846
-
Arg
CCG
[ENA]
¡û
>W1711185157
LWND01000024
Bacillota
Staphylococcus sp. HMSC06C11 [LWND]
93738
93666
-
Arg
CCG
[ENA]
¡û
>WENV180228702
OBCD01016815
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
107
179
+
Arg
CCG
[ENA]
¢þ
>WENV180765646
ODIC01020372
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
645
574
-
Arg
CCG
[ENA]
¢þ
>WENV180766346
ODIE01016289
[ODIE] human metagenome; G_DNA_Anterior nares
142
71
-
Arg
CCG
[ENA]
¢þ
>WENV180857526
ODLB01001695
[ODLB] human metagenome; G_DNA_L_Retroauricular crease
2000
1929
-
Arg
CCG
[ENA]
¢þ
>WENV180984509
ODVG01069213
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
134
205
+
Arg
CCG
[ENA]
¢þ
>WENV181131669
OEGD01000829
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
845
774
-
Arg
CCG
[ENA]
¢þ
>W141255399
CBUB010000008
Bacillota
Staphylococcus capitis CR01 [CBUB]
19280
19352
+
Arg
CCG
[ENA]
¡û
>WENV182640674
OJLC01005950
[OJLC] metagenome; surface
169
98
-
Arg
CCG
[ENA]
¢þ
>WENV182645516
OJLY01033354
[OJLY] metagenome; surface
585
514
-
Arg
CCG
[ENA]
¢þ
>C181001130
AP014956
Bacillota
Staphylococcus capitis TW2795 [AP014956]
2032214
2032286
+
Arg
CCG
-
¡û
>C181092398
CP023966
Bacillota
Staphylococcus capitis FDAARGOS_378 [CP023966]
1854420
1854492
+
Arg
CCG
-
¡û
>C181159355
CP027770
Bacillota
Staphylococcus felis ATCC 49168 [CP027770]
159342
159270
-
Arg
CCG
-
¡û
>C191003633
AP018585
Bacillota
Staphylococcus caprae JMUB145 [AP018585]
2161849
2161920
+
Arg
CCG
-
¡û
>C191003691
AP018586
Bacillota
Staphylococcus caprae JMUB590 [AP018586]
2166172
2166243
+
Arg
CCG
-
¡û
>C191003749
AP018587
Bacillota
Staphylococcus caprae JMUB898 [AP018587]
2149958
2150029
+
Arg
CCG
-
¡û
>W141523557
JGYJ01000018
Bacillota
Staphylococcus capitis [JGYJ]
14685
14613
-
Arg
CCG
[ENA]
¡û
>W141696125
JMGB01000001
Bacillota
Staphylococcus sp. TE8 [JMGB]
258653
258581
-
Arg
CCG
[ENA]
¡û
>W09121914
ACFR01000002
Bacillota
Staphylococcus capitis SK14 [ACFR]
147887
147959
+
Arg
CCG
[ENA]
¡û
>W09126092
ACJB01000052
Bacillota
Staphylococcus caprae M23864:W1 [ACJB]
50312
50241
-
Arg
CCG
[ENA]
¡û
>W1910871999
NDFI01000005
Bacillota
Staphylococcus capitis KR [NDFI]
150895
150824
-
Arg
CCG
[ENA]
¡û
>W1910872095
NDFK01000001
Bacillota
Staphylococcus capitis OG2-1 [NDFK]
262440
262368
-
Arg
CCG
[ENA]
¡û
>W1910872169
NDFL01000002
Bacillota
Staphylococcus caprae OG2-2 [NDFL]
186991
186920
-
Arg
CCG
[ENA]
¡û
>W1911616004
PPPY01000042
Bacillota
Staphylococcus capitis subsp. capitis NCTC 11045 [PPPY]
150630
150559
-
Arg
CCG
[ENA]
¡û
>W1911616508
PPQI01000044
Bacillota
Staphylococcus capitis subsp. urealyticus DSM 6717 [PPQI]
42180
42108
-
Arg
CCG
[ENA]
¡û
>W1911617954
PPRI01000138
Bacillota
Staphylococcus felis DSM 7377 [PPRI]
1078
1150
+
Arg
CCG
[ENA]
¡û
>W1911618526
PPRT01000005
Bacillota
Staphylococcus caprae NCTC 12196 [PPRT]
68265
68194
-
Arg
CCG
[ENA]
¡û
>W1911679156
QHKB01000001
Bacillota
Staphylococcus saccharolyticus DVP5-16-4677 [QHKB]
954407
954478
+
Arg
CCG
[ENA]
¡û
>W1911679207
QHKC01000001
Bacillota
Staphylococcus saccharolyticus DVP4-17-2404 [QHKC]
268808
268737
-
Arg
CCG
[ENA]
¡û
>W1911679256
QHKD01000001
Bacillota
Staphylococcus saccharolyticus DVP2-17-2406 [QHKD]
268808
268737
-
Arg
CCG
[ENA]
¡û
>W1911679306
QHKE01000003
Bacillota
Staphylococcus saccharolyticus DVP3-16-6167 [QHKE]
268318
268247
-
Arg
CCG
[ENA]
¡û
>W1911679334
QHKF01000003
Bacillota
Staphylococcus saccharolyticus 13T0028 [QHKF]
184045
183974
-
Arg
CCG
[ENA]
¡û
>W1911679407
QHKG01000003
Bacillota
Staphylococcus saccharolyticus 12B0021 [QHKG]
268309
268238
-
Arg
CCG
[ENA]
¡û
>W1911679460
QHKH01000003
Bacillota
Staphylococcus saccharolyticus 05B0362 [QHKH]
268300
268229
-
Arg
CCG
[ENA]
¡û
>W1911686368
QKXJ01000053
Bacillota
Staphylococcus felis F1 [QKXJ]
1310
1382
+
Arg
CCG
[ENA]
¡û
>W1911686412
QKXK01000004
Bacillota
Staphylococcus felis F2 [QKXK]
1018
1090
+
Arg
CCG
[ENA]
¡û
>W1911686595
QKXN01000079
Bacillota
Staphylococcus felis F6 [QKXN]
930
1002
+
Arg
CCG
[ENA]
¡û
>W1911686701
QKXP01000299
Bacillota
Staphylococcus felis F8 [QKXP]
930
1002
+
Arg
CCG
[ENA]
¡û
>W1911686710
QKXQ01000013
Bacillota
Staphylococcus felis F9 [QKXQ]
6918
6846
-
Arg
CCG
[ENA]
¡û
>W1911686879
QKXT01000184
Bacillota
Staphylococcus felis F14 [QKXT]
795
867
+
Arg
CCG
[ENA]
¡û
>W1911686974
QKXV01000046
Bacillota
Staphylococcus felis F16 [QKXV]
5264
5192
-
Arg
CCG
[ENA]
¡û
>W1911687033
QKXW01000108
Bacillota
Staphylococcus felis F17 [QKXW]
47414
47342
-
Arg
CCG
[ENA]
¡û
>W1911687090
QKXX01000156
Bacillota
Staphylococcus felis F18 [QKXX]
935
1007
+
Arg
CCG
[ENA]
¡û
>W1911687093
QKXY01000017
Bacillota
Staphylococcus felis F19 [QKXY]
5355
5283
-
Arg
CCG
[ENA]
¡û
>W1911687156
QKXZ01000086
Bacillota
Staphylococcus felis F20 [QKXZ]
1243
1315
+
Arg
CCG
[ENA]
¡û
>W1911687196
QKYA01000017
Bacillota
Staphylococcus felis F21 [QKYA]
1143
1215
+
Arg
CCG
[ENA]
¡û
>W1911687384
QKYE01000006
Bacillota
Staphylococcus felis F26 [QKYE]
931
1003
+
Arg
CCG
[ENA]
¡û
>W1911687459
QKYF01000094
Bacillota
Staphylococcus felis F27 [QKYF]
1210
1282
+
Arg
CCG
[ENA]
¡û
>W1911687546
QKYH01000105
Bacillota
Staphylococcus felis F30 [QKYH]
1061
1133
+
Arg
CCG
[ENA]
¡û
>W1911687613
QKYI01000155
Bacillota
Staphylococcus felis F33 [QKYI]
15897
15825
-
Arg
CCG
[ENA]
¡û
>W1911687656
QKYJ01000167
Bacillota
Staphylococcus felis F34 [QKYJ]
16582
16510
-
Arg
CCG
[ENA]
¡û
>W1911780843
QXRK01000001
Bacillota
Staphylococcus caprae SNUC 4023 [QXRK]
111283
111212
-
Arg
CCG
[ENA]
¡û
>W1911780915
QXRL01000048
Bacillota
Staphylococcus capitis SNUC 5893 [QXRL]
14692
14620
-
Arg
CCG
[ENA]
¡û
>W1911780970
QXRM01000031
Bacillota
Staphylococcus capitis SNUC 4830 [QXRM]
8187
8115
-
Arg
CCG
[ENA]
¡û
>W1911781021
QXRN01000022
Bacillota
Staphylococcus capitis SNUC 3795 [QXRN]
21325
21253
-
Arg
CCG
[ENA]
¡û
>W1911781077
QXRO01000019
Bacillota
Staphylococcus capitis SNUC 3357 [QXRO]
33712
33640
-
Arg
CCG
[ENA]
¡û
>W1911781177
QXRP01000033
Bacillota
Staphylococcus capitis SNUC 2643 [QXRP]
2817
2889
+
Arg
CCG
[ENA]
¡û
>W1911781201
QXRQ01000031
Bacillota
Staphylococcus capitis SNUC 1642 [QXRQ]
21208
21136
-
Arg
CCG
[ENA]
¡û
>W1911781248
QXRR01000001
Bacillota
Staphylococcus capitis SNUC 1319 [QXRR]
446405
446477
+
Arg
CCG
[ENA]
¡û
>W1911781318
QXRS01000011
Bacillota
Staphylococcus capitis SNUC 807 [QXRS]
2530
2602
+
Arg
CCG
[ENA]
¡û
>W1810434370
PZCT01000013
Bacillota
Staphylococcus capitis SNUC 6079 [PZCT]
2745
2817
+
Arg
CCG
[ENA]
¡û
>W1810434472
PZCU01000026
Bacillota
Staphylococcus capitis SNUC 5871 [PZCU]
2817
2889
+
Arg
CCG
[ENA]
¡û
>W1810434493
PZCV01000034
Bacillota
Staphylococcus capitis SNUC 4705 [PZCV]
8091
8163
+
Arg
CCG
[ENA]
¡û
>W1810434551
PZCW01000022
Bacillota
Staphylococcus capitis SNUC 4275 [PZCW]
34854
34782
-
Arg
CCG
[ENA]
¡û
>W1810434604
PZCX01000010
Bacillota
Staphylococcus capitis SNUC 4231 [PZCX]
18735
18807
+
Arg
CCG
[ENA]
¡û
>W1810434673
PZCY01000027
Bacillota
Staphylococcus capitis SNUC 3769 [PZCY]
32626
32554
-
Arg
CCG
[ENA]
¡û
>W1810434711
PZCZ01000004
Bacillota
Staphylococcus capitis SNUC 3379 [PZCZ]
3027
3099
+
Arg
CCG
[ENA]
¡û
>W1810434769
PZDA01000004
Bacillota
Staphylococcus capitis SNUC 2974 [PZDA]
18736
18808
+
Arg
CCG
[ENA]
¡û
>W1810434839
PZDB01000025
Bacillota
Staphylococcus capitis SNUC 2784 [PZDB]
18874
18946
+
Arg
CCG
[ENA]
¡û
>W1810434894
PZDC01000017
Bacillota
Staphylococcus capitis SNUC 2477 [PZDC]
34177
34105
-
Arg
CCG
[ENA]
¡û
>W1810434940
PZDD01000002
Bacillota
Staphylococcus capitis SNUC 2159 [PZDD]
18425
18497
+
Arg
CCG
[ENA]
¡û
>W1810434998
PZDE01000005
Bacillota
Staphylococcus capitis SNUC 1187 [PZDE]
154198
154126
-
Arg
CCG
[ENA]
¡û
>W1810435076
PZDF01000098
Bacillota
Staphylococcus capitis SNUC 895 [PZDF]
2437
2509
+
Arg
CCG
[ENA]
¡û
>W1810435115
PZDG01000005
Bacillota
Staphylococcus capitis SNUC 791 [PZDG]
153956
153884
-
Arg
CCG
[ENA]
¡û
>C151029732
CP007601
Bacillota
Staphylococcus capitis subsp. capitis AYP1020 [CP007601]
139172
139100
-
Arg
CCG
[Ensembl]
¡û
>W1510562281
CTEB01000001
Bacillota
Staphylococcus capitis CR03 [CTEB]
1006172
1006244
+
Arg
CCG
[ENA]
¡û
>W1510562827
CTEL01000023
Bacillota
Staphylococcus capitis CR09 [CTEL]
19280
19352
+
Arg
CCG
[ENA]
¡û
>W1510562876
CTEM01000013
Bacillota
Staphylococcus capitis CR04 [CTEM]
19284
19356
+
Arg
CCG
[ENA]
¡û
>W1510562998
CTEO01000023
Bacillota
Staphylococcus capitis CR05 [CTEO]
19281
19353
+
Arg
CCG
[ENA]
¡û
>W11103913
ACRH01000015
Bacillota
Staphylococcus capitis C87 [ACRH]
45323
45252
-
Arg
CCG
[ENA]
¡û
>W1510646414
CVOJ01000023
Bacillota
Staphylococcus capitis CR05 [CVOJ]
19281
19353
+
Arg
CCG
[ENA]
¡û
>W1510646451
CVOK01000023
Bacillota
Staphylococcus capitis CR09 [CVOK]
19280
19352
+
Arg
CCG
[ENA]
¡û
>W1510652121
CVUF01000026
Bacillota
Staphylococcus capitis CR03 [CVUF]
19281
19353
+
Arg
CCG
[ENA]
¡û
>W1511440721
JUPO01000108
Bacillota
Staphylococcus capitis 880_SEPI [JUPO]
93740
93668
-
Arg
CCG
[ENA]
¡û
>W1511445552
JUVR01000103
Bacillota
Staphylococcus capitis 722_SEPI [JUVR]
21476
21547
+
Arg
CCG
[ENA]
¡û
>W1511446642
JUXJ01000016
Bacillota
Staphylococcus capitis 680_SEPI [JUXJ]
21064
21136
+
Arg
CCG
[ENA]
¡û
>W1511447011
JUXY01000028
Bacillota
Staphylococcus capitis 664.rep2_SAUR [JUXY]
264470
264398
-
Arg
CCG
[ENA]
¡û
>W1511447280
JUYG01000037
Bacillota
Staphylococcus capitis 658_SEPI [JUYG]
134288
134360
+
Arg
CCG
[ENA]
¡û
>W1511447603
JUYU01000005
Bacillota
Staphylococcus capitis 645_SEPI [JUYU]
19341
19413
+
Arg
CCG
[ENA]
¡û
>W1511448362
JUZS01000004
Bacillota
Staphylococcus capitis 622_SHAE [JUZS]
264367
264295
-
Arg
CCG
[ENA]
¡û
>W1511448449
JUZV01000004
Bacillota
Staphylococcus capitis 619_SEPI [JUZV]
264363
264291
-
Arg
CCG
[ENA]
¡û
>W1511448899
JVAJ01000071
Bacillota
Staphylococcus capitis 605_SAUR [JVAJ]
134288
134360
+
Arg
CCG
[ENA]
¡û
>W1511450384
JVCA01000039
Bacillota
Staphylococcus capitis 562_SWAR [JVCA]
52376
52448
+
Arg
CCG
[ENA]
¡û
>W1511450566
JVCF01000003
Bacillota
Staphylococcus capitis 558_SAUR [JVCF]
22681
22753
+
Arg
CCG
[ENA]
¡û
>W1511452695
JVEM01000001
Bacillota
Staphylococcus capitis 505_SAUR [JVEM]
18496
18568
+
Arg
CCG
[ENA]
¡û
>W1511455765
JVGZ01000047
Bacillota
Staphylococcus capitis 441_SEPI [JVGZ]
19529
19600
+
Arg
CCG
[ENA]
¡û
>W1511463160
JVOH01000087
Bacillota
Staphylococcus warneri 252_SWAR [JVOH]
25750
25821
+
Arg
CCG
[ENA]
¡û
>W1511463351
JVOP01000031
Bacillota
Staphylococcus capitis 245_SAUR [JVOP]
23011
22939
-
Arg
CCG
[ENA]
¡û
>W1511467372
JVSX01000014
Bacillota
Staphylococcus capitis 1341_SEPI [JVSX]
115968
116040
+
Arg
CCG
[ENA]
¡û
>W1511469351
JVVH01000163
Bacillota
Staphylococcus capitis 129_SAUR [JVVH]
134284
134356
+
Arg
CCG
[ENA]
¡û
>W1511473864
JWAZ01000011
Bacillota
Staphylococcus capitis 1157_SAUR [JWAZ]
264376
264304
-
Arg
CCG
[ENA]
¡û
>W1511475477
JWDH01000021
Bacillota
Staphylococcus capitis 1090_SEPI [JWDH]
147384
147456
+
Arg
CCG
[ENA]
¡û
>W1511476063
JWED01000019
Bacillota
Staphylococcus capitis 1069_SEPI [JWED]
134296
134368
+
Arg
CCG
[ENA]
¡û
>W1511476831
JWFD01000009
Bacillota
Staphylococcus capitis 104_SEPI [JWFD]
134294
134366
+
Arg
CCG
[ENA]
¡û
>W1511517688
JXXP01000064
Bacillota
Staphylococcus caprae 9557 [JXXP]
31985
32056
+
Arg
CCG
[ENA]
¡û
>W11173437
AFTX01000006
Bacillota
Staphylococcus capitis VCU116 [AFTX]
34745
34673
-
Arg
CCG
[ENA]
¡û
>W1610123397
CZWH01000020
Bacillota
Staphylococcus capitis [CZWH]
19281
19353
+
Arg
CCG
[ENA]
¡û
>W1610123443
CZWI01000021
Bacillota
Staphylococcus capitis [CZWI]
2184
2256
+
Arg
CCG
[ENA]
¡û
>W121067435
AJTH01000002
Bacillota
Staphylococcus capitis QN1 [AJTH]
19337
19408
+
Arg
CCG
[ENA]
¡û
>W1610802425
LORZ01000001
Bacillota
Staphylococcus capitis [LORZ]
1177924
1177996
+
Arg
CCG
[ENA]
¡û
>W1610915427
LSKZ01000005
Bacillota
Staphylococcus capitis [LSKZ]
154262
154190
-
Arg
CCG
[ENA]
¡û
>W1610915454
LSLA01000004
Bacillota
Staphylococcus capitis [LSLA]
258913
258841
-
Arg
CCG
[ENA]
¡û
>W1610981692
LWCP01000024
Bacillota
Staphylococcus capitis [LWCP]
37141
37213
+
Arg
CCG
[ENA]
¡û
>W1610981753
LWCQ01000026
Bacillota
Staphylococcus capitis [LWCQ]
150917
150846
-
Arg
CCG
[ENA]
¡û
>W1710125064
CZWH01000020
Bacillota
Staphylococcus capitis [CZWH]
19281
19353
+
Arg
CCG
[ENA]
¡û
>W1710125110
CZWI01000021
Bacillota
Staphylococcus capitis [CZWI]
2184
2256
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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