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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343565 (94 seq.)
>W1710926743
LOEL01000002
Bacteroidota
Porphyromonas gingivalis [LOEL]
44065
44139
+
His
GTG
[ENA]
¡û
>W131111454
APMB01000262
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
45304
45230
-
His
GTG
[ENA]
¡û
>W131175800
ARJN01000051
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
40167
40093
-
His
GTG
[ENA]
¡û
>W1712084861
NHRU01000002
Bacteroidota
Porphyromonas gingivalis [NHRU]
334837
334911
+
His
GTG
[ENA]
¡û
>C016367
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
1669233
1669307
+
His
GTG
[Ensembl]
¡û
>WENV180003978
FLRQ01000496
[FLRQ] metagenome; saliva
732
658
-
His
GTG
[ENA]
¢þ
>WENV180004221
FLRR01016641
[FLRR] metagenome; saliva
98
24
-
His
GTG
[ENA]
¢þ
>WENV180005846
FLRX01008093
[FLRX] metagenome; saliva
123
197
+
His
GTG
[ENA]
¢þ
>WENV180006949
FLRZ01037425
[FLRZ] metagenome; saliva
202
128
-
His
GTG
[ENA]
¢þ
>WENV180007642
FLSA01139771
[FLSA] metagenome; saliva
142
68
-
His
GTG
[ENA]
¢þ
>WENV180010078
FLSC01281056
[FLSC] metagenome; saliva
83
155
+
His
GTG
[ENA]
¢þ
>WENV180010625
FLSD01028274
[FLSD] metagenome; saliva
66
140
+
His
GTG
[ENA]
¢þ
>WENV180010919
FLSI01018472
[FLSI] metagenome; saliva
391
317
-
His
GTG
[ENA]
¢þ
>WENV180011856
FLSK01067996
[FLSK] metagenome; saliva
8
82
+
His
GTG
[ENA]
¢þ
>WENV180731541
ODGW01001776
[ODGW] human metagenome; G_DNA_Supragingival plaque
3671
3597
-
His
GTG
[ENA]
¢þ
>W141074436
ASYL01000075
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
39453
39527
+
His
GTG
[ENA]
¡û
>W141145629
AWUU01000058
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
15136
15210
+
His
GTG
[ENA]
¡û
>W141145671
AWUV01000060
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
15681
15755
+
His
GTG
[ENA]
¡û
>W141145716
AWUW01000075
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
17608
17534
-
His
GTG
[ENA]
¡û
>W141145945
AWVC01000053
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
23696
23622
-
His
GTG
[ENA]
¡û
>W141145994
AWVD01000090
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
10606
10532
-
His
GTG
[ENA]
¡û
>W141146059
AWVE01000146
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
15138
15212
+
His
GTG
[ENA]
¡û
>WENV181980668
OHAF01094966
[OHAF] human gut metagenome; faeces
172
246
+
His
GTG
[ENA]
¢þ
>WENV182004723
OHBE01000408
[OHBE] human gut metagenome; faeces
42980
43054
+
His
GTG
[ENA]
¢þ
>C08007312
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
570985
570914
-
His
GTG
[Ensembl]
¡û
>WENV183507887
OMGZ01000012
[OMGZ] human oral metagenome; human oral
4993
5067
+
His
GTG
[ENA]
¢þ
>WENV183507992
OMHA01000559
[OMHA] human oral metagenome; human oral
955
881
-
His
GTG
[ENA]
¢þ
>WENV183510886
OMHT01000014
[OMHT] human oral metagenome; human oral
6714
6788
+
His
GTG
[ENA]
¢þ
>C181102072
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
767825
767899
+
His
GTG
-
¡û
>C181102130
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
1771760
1771834
+
His
GTG
-
¡û
>C181102186
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
1811747
1811673
-
His
GTG
-
¡û
>C181102247
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
726544
726470
-
His
GTG
-
¡û
>C181102275
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
1572144
1572218
+
His
GTG
-
¡û
>C181102326
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1838275
1838349
+
His
GTG
-
¡û
>C181102383
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
1516568
1516494
-
His
GTG
-
¡û
>C181102410
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
398713
398787
+
His
GTG
-
¡û
>C181102461
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
555757
555831
+
His
GTG
-
¡û
>C181102536
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
2095747
2095673
-
His
GTG
-
¡û
>C181102574
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
2196353
2196279
-
His
GTG
-
¡û
>C181123616
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
572040
571966
-
His
GTG
-
¡û
>C181123639
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
1407619
1407693
+
His
GTG
-
¡û
>C181123689
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
1669232
1669306
+
His
GTG
-
¡û
>W1910371020
FUFB01000029
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
30573
30647
+
His
GTG
[ENA]
¡û
>W1910371071
FUFC01000025
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
21252
21178
-
His
GTG
[ENA]
¡û
>W1910371123
FUFD01000063
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
17933
17859
-
His
GTG
[ENA]
¡û
>W1910371130
FUFE01000003
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
43651
43725
+
His
GTG
[ENA]
¡û
>W1910371191
FUFF01000011
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
5669
5595
-
His
GTG
[ENA]
¡û
>W1910371236
FUFG01000025
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
52279
52205
-
His
GTG
[ENA]
¡û
>W1910371258
FUFH01000005
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
24664
24590
-
His
GTG
[ENA]
¡û
>W1910371322
FUFI01000019
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
41614
41688
+
His
GTG
[ENA]
¡û
>W1910371342
FUFJ01000002
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
296
370
+
His
GTG
[ENA]
¡û
>W1910372566
FUGF01000030
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
52586
52660
+
His
GTG
[ENA]
¡û
>W1910372615
FUGG01000043
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
26830
26904
+
His
GTG
[ENA]
¡û
>W1911247355
NSLL01000001
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
65040
65114
+
His
GTG
[ENA]
¡û
>W1911247408
NSLM01000004
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
101623
101697
+
His
GTG
[ENA]
¡û
>W1911247443
NSLN01000003
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
21015
21089
+
His
GTG
[ENA]
¡û
>W1911247501
NSLO01000009
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
66449
66523
+
His
GTG
[ENA]
¡û
>W1911247550
NSLP01000021
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
24638
24564
-
His
GTG
[ENA]
¡û
>W1911247599
NSLQ01000022
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
18079
18005
-
His
GTG
[ENA]
¡û
>W1911247642
NSLR01000031
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
859
933
+
His
GTG
[ENA]
¡û
>W1911247668
NSLS01000004
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
61817
61891
+
His
GTG
[ENA]
¡û
>W1911247725
NSLT01000022
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
31864
31938
+
His
GTG
[ENA]
¡û
>W1911247758
NSLU01000026
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
23303
23377
+
His
GTG
[ENA]
¡û
>W1911247808
NSLV01000018
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
23641
23715
+
His
GTG
[ENA]
¡û
>W1911247845
NSLW01000004
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
106630
106704
+
His
GTG
[ENA]
¡û
>W1911247896
NSLX01000015
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
19533
19459
-
His
GTG
[ENA]
¡û
>W1911709119
QPGS01000013
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
457
531
+
His
GTG
[ENA]
¡û
>W1810573730
QEKY01000012
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
44695
44622
-
His
GTG
[ENA]
¡û
>C151089070
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
470397
470323
-
His
GTG
-
¡û
>C151089117
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
467026
466952
-
His
GTG
-
¡û
>C11117332
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
751266
751192
-
His
GTG
[Ensembl]
¡û
>W1511328349
JQJE01000014
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
118027
118101
+
His
GTG
[ENA]
¡û
>W1511336131
JQZY01000015
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
41771
41845
+
His
GTG
[ENA]
¡û
>W1511336375
JRAE01000071
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
46926
47000
+
His
GTG
[ENA]
¡û
>W1511336396
JRAF01000021
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
28952
29026
+
His
GTG
[ENA]
¡û
>W1511336447
JRAG01000018
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
43509
43435
-
His
GTG
[ENA]
¡û
>W1511336549
JRAI01000063
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
41678
41752
+
His
GTG
[ENA]
¡û
>W1511336584
JRAJ01000010
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
27510
27436
-
His
GTG
[ENA]
¡û
>W1511336609
JRAK01000017
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
1085
1159
+
His
GTG
[ENA]
¡û
>W1511336673
JRAL01000026
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
21387
21313
-
His
GTG
[ENA]
¡û
>W1511336846
JRAQ01000035
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
108797
108871
+
His
GTG
[ENA]
¡û
>W1511336929
JRAT01000009
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
43290
43216
-
His
GTG
[ENA]
¡û
>W1511343931
JRFD01000029
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
43326
43252
-
His
GTG
[ENA]
¡û
>C161018160
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
770255
770181
-
His
GTG
[Ensembl]
¡û
>C161046957
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
570752
570678
-
His
GTG
-
¡û
>C161051765
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
570716
570790
+
His
GTG
-
¡û
>W121073569
AJZS01000069
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
40754
40680
-
His
GTG
[ENA]
¡û
>W1610060548
BCBV01000081
Bacteroidota
Porphyromonas gingivalis [BCBV]
57153
57079
-
His
GTG
[ENA]
¡û
>W1610784236
LOEL01000002
Bacteroidota
Porphyromonas gingivalis [LOEL]
44065
44139
+
His
GTG
[ENA]
¡û
>W1710017894
ASYM01000088
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
5359
5285
-
His
GTG
[ENA]
¡û
>W1710017922
ASYN01000108
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
42335
42261
-
His
GTG
[ENA]
¡û
>W1710017984
ASYO01000093
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
54659
54585
-
His
GTG
[ENA]
¡û
>W1710018006
ASYP01000057
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
17585
17511
-
His
GTG
[ENA]
¡û
>W1710057803
BCBV01000081
Bacteroidota
Porphyromonas gingivalis [BCBV]
57153
57079
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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