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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.343837 (21 seq.)
>WENV181818950
OGTU01000579
[OGTU] human gut metagenome; fecal sample 6 from infant 4
5265
5189
-
Met
CAT
[ENA]
¡û
>WENV181819002
OGTU01003173
[OGTU] human gut metagenome; fecal sample 6 from infant 4
1186
1262
+
Met
CAT
[ENA]
¡û
>WENV181819019
OGTU01005815
[OGTU] human gut metagenome; fecal sample 6 from infant 4
710
786
+
Met
CAT
[ENA]
¡û
>WENV170560798
CZCA01000592
[CZCA] anaerobic digester metagenome; anaerobic digester
13306
13230
-
Met
CAT
[ENA]
¡û
>C191025597
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1938035
1938111
+
Met
CAT
-
¡û
>C191025600
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
1938309
1938385
+
Met
CAT
-
¡û
>C191123792
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
722772
722848
+
Met
CAT
-
¡û
>C191123795
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
723046
723122
+
Met
CAT
-
¡û
>W2010282673
CABMIZ010000006
Bacillota
Clostridium septicum [CABMIZ]
89975
90051
+
Met
CAT
[ENA]
¡û
>W2010282676
CABMIZ010000006
Bacillota
Clostridium septicum [CABMIZ]
90249
90325
+
Met
CAT
[ENA]
¡û
>W2011687007
SRYR01000014
Bacillota
Clostridium sartagoforme NM50_B9-20 [SRYR]
60577
60653
+
Met
CAT
[ENA]
¡û
>W2011687014
SRYR01000020
Bacillota
Clostridium sartagoforme NM50_B9-20 [SRYR]
163
239
+
Met
CAT
[ENA]
¡û
>C231418529
CP099799
Bacillota
Clostridium septicum RMA 8861 [CP099799]
210963
211039
+
Met
CAT
-
¡û
>C231418532
CP099799
Bacillota
Clostridium septicum RMA 8861 [CP099799]
211237
211313
+
Met
CAT
-
¡û
>C241297349
CP131445
Bacillota
Clostridium septicum WW106 [CP131445]
209487
209563
+
Met
CAT
-
¡û
>C241297352
CP131445
Bacillota
Clostridium septicum WW106 [CP131445]
209761
209837
+
Met
CAT
-
¡û
>W1511595435
LBMX01000005
Bacillota
Clostridium sp. C8 [LBMX]
125379
125455
+
Met
CAT
[ENA]
¡û
>W1610507726
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
89975
90051
+
Met
CAT
[ENA]
¡û
>W1610507729
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
90249
90325
+
Met
CAT
[ENA]
¡û
>W1710499944
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
89975
90051
+
Met
CAT
[ENA]
¡û
>W1710499947
FLTT01000006
Bacillota
Clostridium septicum [FLTT]
90249
90325
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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