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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344203 (104 seq.)
>C171131121
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
321821
321895
+
Gly
GCC
-
¡û
>C171131157
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2507927
2507853
-
Gly
GCC
-
¡û
>C171131165
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2507223
2507149
-
Gly
GCC
-
¡û
>C171131181
LT799839
Bacillota
Clostridium chauvoei JF4335 [LT799839]
2120109
2120035
-
Gly
GCC
-
¡û
>W131195028
ASRV01000161
Bacillota
Clostridium sartagoforme AAU1 [ASRV]
154
80
-
Gly
GCC
[ENA]
¡û
>WENV180153217
OAUR01008553
[OAUR] human gut metagenome; faeces
626
552
-
Gly
GCC
[ENA]
¢þ
>WENV180177001
OAWD01014503
[OAWD] human gut metagenome; faeces
543
469
-
Gly
GCC
[ENA]
¢þ
>WENV180180650
OAWL01000193
[OAWL] human gut metagenome; faeces
5430
5356
-
Gly
GCC
[ENA]
¢þ
>WENV180415490
OBVE01000953
[OBVE] human gut metagenome; faeces
2526
2452
-
Gly
GCC
[ENA]
¢þ
>WENV180421964
OBVS01000021
[OBVS] human gut metagenome; faeces
142986
143060
+
Gly
GCC
[ENA]
¢þ
>WENV180427487
OBWA01016497
[OBWA] human gut metagenome; faeces
226
300
+
Gly
GCC
[ENA]
¢þ
>WENV180488936
OBZR01002904
[OBZR] human gut metagenome; faeces
3681
3607
-
Gly
GCC
[ENA]
¢þ
>WENV180762387
ODHZ01120582
[ODHZ] human metagenome; G_DNA_Stool
75
1
-
Gly
GCC
[ENA]
¢þ
>WENV180826821
ODJZ01043245
[ODJZ] human metagenome; G_DNA_Stool
121
47
-
Gly
GCC
[ENA]
¢þ
>W141083143
AUPH01002095
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
106
180
+
Gly
GCC
[ENA]
¡û
>WENV181467780
OGER01049987
[OGER] metagenome; Human gut stool
145
219
+
Gly
GCC
[ENA]
¢þ
>WENV181672373
OGON01068761
[OGON] human gut metagenome; faeces
32
106
+
Gly
GCC
[ENA]
¢þ
>WENV181732497
OGQD01045091
[OGQD] human gut metagenome; faeces
68
142
+
Gly
GCC
[ENA]
¢þ
>WENV181753089
OGQQ01065389
[OGQQ] human gut metagenome; faeces
218
144
-
Gly
GCC
[ENA]
¢þ
>WENV181805176
OGSH01001346
[OGSH] human gut metagenome; fecal sample 5 from infant 6
3455
3381
-
Gly
GCC
[ENA]
¢þ
>WENV181805244
OGSH01007682
[OGSH] human gut metagenome; fecal sample 5 from infant 6
185
111
-
Gly
GCC
[ENA]
¢þ
>WENV181805888
OGSJ01001216
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
415
489
+
Gly
GCC
[ENA]
¢þ
>WENV181805892
OGSJ01001216
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
765
839
+
Gly
GCC
[ENA]
¢þ
>WENV181805907
OGSJ01001444
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
213
139
-
Gly
GCC
[ENA]
¢þ
>WENV181805933
OGSJ01001822
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
195
269
+
Gly
GCC
[ENA]
¢þ
>WENV181807706
OGSQ01000044
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
60215
60289
+
Gly
GCC
[ENA]
¢þ
>WENV181807717
OGSQ01000049
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
39833
39907
+
Gly
GCC
[ENA]
¢þ
>WENV181810967
OGSX01000174
[OGSX] human gut metagenome; fecal sample 1 from infant 8
18020
18094
+
Gly
GCC
[ENA]
¢þ
>WENV181814857
OGTH01000656
[OGTH] human gut metagenome; fecal sample 4 from infant 6
78
4
-
Gly
GCC
[ENA]
¢þ
>WENV181817627
OGTN01001732
[OGTN] human gut metagenome; fecal sample 5 from infant 4
2817
2891
+
Gly
GCC
[ENA]
¢þ
>WENV181819031
OGTU01008505
[OGTU] human gut metagenome; fecal sample 6 from infant 4
250
176
-
Gly
GCC
[ENA]
¢þ
>WENV182108857
OHIM01002444
[OHIM] human gut metagenome; feces
6083
6009
-
Gly
GCC
[ENA]
¢þ
>WENV182377587
OIDF01045942
[OIDF] human gut metagenome; feces
272
198
-
Gly
GCC
[ENA]
¢þ
>WENV182405965
OIEX01000055
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
102
176
+
Gly
GCC
[ENA]
¢þ
>WENV182613857
OJKA01024703
[OJKA] metagenome; faeces
375
449
+
Gly
GCC
[ENA]
¢þ
>WENV182799851
OJTW01002998
[OJTW] human gut metagenome; human gut
782
856
+
Gly
GCC
[ENA]
¢þ
>WENV182803555
OJUL01005484
[OJUL] human gut metagenome; human gut
908
982
+
Gly
GCC
[ENA]
¢þ
>WENV182807200
OJVV01001610
[OJVV] human gut metagenome; human gut
1169
1095
-
Gly
GCC
[ENA]
¢þ
>WENV182813196
OJXZ01004306
[OJXZ] human gut metagenome; human gut
295
221
-
Gly
GCC
[ENA]
¢þ
>WENV182815350
OJYQ01002610
[OJYQ] human gut metagenome; human gut
564
638
+
Gly
GCC
[ENA]
¢þ
>WENV182815810
OJYU01001879
[OJYU] human gut metagenome; human gut
470
544
+
Gly
GCC
[ENA]
¢þ
>WENV182816577
OJZB01000414
[OJZB] human gut metagenome; human gut
2558
2484
-
Gly
GCC
[ENA]
¢þ
>WENV182820672
OKAO01003025
[OKAO] human gut metagenome; human gut
109
183
+
Gly
GCC
[ENA]
¢þ
>WENV182828075
OKDE01010571
[OKDE] human gut metagenome; human gut
331
405
+
Gly
GCC
[ENA]
¢þ
>WENV182830330
OKDX01007865
[OKDX] human gut metagenome; human gut
250
176
-
Gly
GCC
[ENA]
¢þ
>WENV182831771
OKEH01002760
[OKEH] human gut metagenome; human gut
86
12
-
Gly
GCC
[ENA]
¢þ
>WENV182832920
OKEP01001199
[OKEP] human gut metagenome; human gut
1242
1316
+
Gly
GCC
[ENA]
¢þ
>WENV182838202
OKGO01002194
[OKGO] human gut metagenome; human gut
171
245
+
Gly
GCC
[ENA]
¢þ
>WENV182838343
OKGR01004418
[OKGR] human gut metagenome; human gut
397
323
-
Gly
GCC
[ENA]
¢þ
>WENV182838526
OKGS01003515
[OKGS] human gut metagenome; human gut
1598
1524
-
Gly
GCC
[ENA]
¢þ
>WENV182842746
OKIF01003862
[OKIF] human gut metagenome; human gut
571
497
-
Gly
GCC
[ENA]
¢þ
>WENV182843228
OKIK01007276
[OKIK] human gut metagenome; human gut
247
321
+
Gly
GCC
[ENA]
¢þ
>WENV182843517
OKIM01004554
[OKIM] human gut metagenome; human gut
1
75
+
Gly
GCC
[ENA]
¢þ
>WENV182843521
OKIM01004554
[OKIM] human gut metagenome; human gut
351
425
+
Gly
GCC
[ENA]
¢þ
>WENV182844291
OKIR01000745
[OKIR] human gut metagenome; human gut
3176
3250
+
Gly
GCC
[ENA]
¢þ
>WENV182848046
OKKE01006773
[OKKE] human gut metagenome; human gut
463
389
-
Gly
GCC
[ENA]
¢þ
>WENV182849872
OKKU01001156
[OKKU] human gut metagenome; human gut
600
674
+
Gly
GCC
[ENA]
¢þ
>WENV182850933
OKLH01003116
[OKLH] human gut metagenome; human gut
416
490
+
Gly
GCC
[ENA]
¢þ
>WENV182855301
OKMY01004448
[OKMY] human gut metagenome; human gut
793
719
-
Gly
GCC
[ENA]
¢þ
>WENV182862822
OKPP01005980
[OKPP] human gut metagenome; human gut
909
835
-
Gly
GCC
[ENA]
¢þ
>WENV182862828
OKPP01005980
[OKPP] human gut metagenome; human gut
399
325
-
Gly
GCC
[ENA]
¢þ
>WENV182863569
OKPT01008949
[OKPT] human gut metagenome; human gut
333
407
+
Gly
GCC
[ENA]
¢þ
>WENV182864793
OKQE01002880
[OKQE] human gut metagenome; human gut
333
407
+
Gly
GCC
[ENA]
¢þ
>WENV182952765
OKVW01017996
[OKVW] human gut metagenome; human gut
439
513
+
Gly
GCC
[ENA]
¢þ
>WENV182963437
OKWQ01000383
[OKWQ] human gut metagenome; stool
14202
14276
+
Gly
GCC
[ENA]
¢þ
>WENV183173259
OLPD01001281
[OLPD] human gut metagenome; faeces
12945
13016
+
Gly
ACC
[ENA]
¢þ
>WENV183589848
OOCW01009035
[OOCW] human gut metagenome; human gut
1786
1712
-
Gly
CCC
[ENA]
¢þ
>C181031995
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2770067
2769993
-
Gly
GCC
-
¡û
>C181032008
CP018630
Bacillota
Clostridium chauvoei 12S0467 [CP018630]
2705075
2705001
-
Gly
GCC
-
¡û
>C191012384
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
350539
350613
+
Gly
GCC
-
¡û
>C191123816
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
956080
956154
+
Gly
GCC
-
¡û
>C191123823
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
956789
956863
+
Gly
GCC
-
¡û
>C191123834
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
1371621
1371695
+
Gly
GCC
-
¡û
>W09118952
ACDK01000075
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
107381
107307
-
Gly
GCC
[ENA]
¡û
>W09118993
ACDK01000132
Bacillota
Clostridium sp. 7_2_43FAA [ACDK]
154
80
-
Gly
GCC
[ENA]
¡û
>W1911491420
OAOE01000019
Bacillota
Clostridium tertium [OAOE]
67565
67639
+
Gly
GCC
[ENA]
¡û
>W1911493925
OBJV01000002
Bacillota
Clostridium tertium [OBJV]
258898
258824
-
Gly
GCC
[ENA]
¡û
>W1911493969
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
4555
4481
-
Gly
GCC
[ENA]
¡û
>W1911493976
OBJV01000016
Bacillota
Clostridium tertium [OBJV]
3959
3885
-
Gly
GCC
[ENA]
¡û
>W1810604912
QGMU01000004
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
105565
105491
-
Gly
GCC
[ENA]
¡û
>W1810604980
QGMU01000038
Bacillota
Clostridium tertium Gcol.A43 [QGMU]
3989
3915
-
Gly
GCC
[ENA]
¡û
>W1810605003
QGMV01000006
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
105396
105322
-
Gly
GCC
[ENA]
¡û
>W1810605042
QGMV01000018
Bacillota
Clostridium tertium Gcol.A2 [QGMV]
155
81
-
Gly
GCC
[ENA]
¡û
>W1510755221
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1466242
1466168
-
Gly
GCC
[ENA]
¡û
>W1510755240
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1007741
1007667
-
Gly
GCC
[ENA]
¡û
>W1511595455
LBMX01000013
Bacillota
Clostridium sp. C8 [LBMX]
6674
6748
+
Gly
GCC
[ENA]
¡û
>W1610501279
FLKB01000016
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
1558446
1558372
-
Gly
GCC
[ENA]
¡û
>W1610501289
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24701
24627
-
Gly
GCC
[ENA]
¡û
>W1610501296
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24080
24006
-
Gly
GCC
[ENA]
¡û
>W1610501303
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23459
23385
-
Gly
GCC
[ENA]
¡û
>W1610501310
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22838
22764
-
Gly
GCC
[ENA]
¡û
>W1610501317
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22216
22142
-
Gly
GCC
[ENA]
¡û
>W1610507702
FLTT01000001
Bacillota
Clostridium septicum [FLTT]
104365
104439
+
Gly
GCC
[ENA]
¡û
>W1610507747
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
57819
57893
+
Gly
GCC
[ENA]
¡û
>W1610507755
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
58529
58603
+
Gly
GCC
[ENA]
¡û
>W1710494749
FLKB01000016
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
1558446
1558372
-
Gly
GCC
[ENA]
¡û
>W1710494759
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24701
24627
-
Gly
GCC
[ENA]
¡û
>W1710494766
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
24080
24006
-
Gly
GCC
[ENA]
¡û
>W1710494773
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
23459
23385
-
Gly
GCC
[ENA]
¡û
>W1710494780
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22838
22764
-
Gly
GCC
[ENA]
¡û
>W1710494787
FLKB01000018
Bacillota
Clostridium nigeriense Marseille-P2414 [FLKB]
22216
22142
-
Gly
GCC
[ENA]
¡û
>W1710499920
FLTT01000001
Bacillota
Clostridium septicum [FLTT]
104365
104439
+
Gly
GCC
[ENA]
¡û
>W1710499965
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
57819
57893
+
Gly
GCC
[ENA]
¡û
>W1710499973
FLTT01000018
Bacillota
Clostridium septicum [FLTT]
58529
58603
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK