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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344320 (102 seq.)
>W1711308510
MAPZ01000035
Bacillota
Clostridium paraputrificum [MAPZ]
85254
85180
-
Asn
GTT
[ENA]
¡û
>W1711320416
MBAF01000002
Bacillota
Clostridium beijerinckii [MBAF]
2694
2768
+
Asn
GTT
[ENA]
¡û
>W1711320446
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
120326
120400
+
Asn
GTT
[ENA]
¡û
>W1711320447
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
120636
120710
+
Asn
GTT
[ENA]
¡û
>W131232279
AUJC01000013
Bacillota
Clostridium paraputrificum AGR2156 [AUJC]
43424
43350
-
Asn
GTT
[ENA]
¡û
>C171045974
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
162517
162591
+
Asn
GTT
-
¡û
>C171045975
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
162750
162824
+
Asn
GTT
-
¡û
>C171045976
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
163229
163303
+
Asn
GTT
-
¡û
>C171046008
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
478541
478615
+
Asn
GTT
-
¡û
>C171046021
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
2094533
2094607
+
Asn
GTT
-
¡û
>WENV180177032
OAWD01023210
[OAWD] human gut metagenome; faeces
235
161
-
Asn
GTT
[ENA]
¢þ
>WENV180275635
OBHU01000023
[OBHU] human gut metagenome; feces
172
98
-
Asn
GTT
[ENA]
¢þ
>WENV180312135
OBJW01013536
[OBJW] human gut metagenome; human gut
86
12
-
Asn
GTT
[ENA]
¢þ
>WENV180439818
OBWT01021669
[OBWT] human gut metagenome; faeces
95
169
+
Asn
GTT
[ENA]
¢þ
>WENV180477458
OBYZ01000898
[OBYZ] human gut metagenome; faeces
13283
13357
+
Asn
GTT
[ENA]
¢þ
>WENV180486243
OBZL01000078
[OBZL] human gut metagenome; faeces
63
137
+
Asn
GTT
[ENA]
¢þ
>WENV181225950
OFDJ01002885
[OFDJ] metagenome; Human gut stool
323
397
+
Asn
GTT
[ENA]
¢þ
>WENV181463462
OGEO01003691
[OGEO] metagenome; Human gut stool
3747
3673
-
Asn
GTT
[ENA]
¢þ
>WENV181798759
OGRX01000121
[OGRX] human gut metagenome; fecal sample 2 from infant 8
329
403
+
Asn
GTT
[ENA]
¢þ
>WENV181801893
OGSC01000271
[OGSC] human gut metagenome; fecal sample 8 from infant 5
36404
36330
-
Asn
GTT
[ENA]
¢þ
>WENV181804326
OGSF01000087
[OGSF] human gut metagenome; fecal sample 3 from infant 5
51594
51520
-
Asn
GTT
[ENA]
¢þ
>WENV181805011
OGSH01000236
[OGSH] human gut metagenome; fecal sample 5 from infant 6
323
397
+
Asn
GTT
[ENA]
¢þ
>WENV181805315
OGSI01000063
[OGSI] human gut metagenome; fecal sample 4 from infant 8
77860
77786
-
Asn
GTT
[ENA]
¢þ
>WENV181805710
OGSJ01000295
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
41137
41063
-
Asn
GTT
[ENA]
¢þ
>WENV181806145
OGSK01000086
[OGSK] human gut metagenome; fecal sample 2 from infant 5
51599
51525
-
Asn
GTT
[ENA]
¢þ
>WENV181807335
OGSO01000131
[OGSO] human gut metagenome; fecal sample 3 from infant 6
106
180
+
Asn
GTT
[ENA]
¢þ
>WENV181809483
OGST01000292
[OGST] human gut metagenome; fecal sample 7 from infant 6
323
397
+
Asn
GTT
[ENA]
¢þ
>WENV181809979
OGSU01000190
[OGSU] human gut metagenome; fecal sample 7 from infant 5
106
180
+
Asn
GTT
[ENA]
¢þ
>WENV181810928
OGSX01000031
[OGSX] human gut metagenome; fecal sample 1 from infant 8
77913
77839
-
Asn
GTT
[ENA]
¢þ
>WENV181811190
OGSY01000156
[OGSY] human gut metagenome; fecal sample 5 from infant 8
95
169
+
Asn
GTT
[ENA]
¢þ
>WENV181811710
OGSZ01000467
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
803
729
-
Asn
GTT
[ENA]
¢þ
>WENV181811725
OGSZ01000615
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
11824
11750
-
Asn
GTT
[ENA]
¢þ
>WENV181814736
OGTH01000185
[OGTH] human gut metagenome; fecal sample 4 from infant 6
41177
41103
-
Asn
GTT
[ENA]
¢þ
>WENV181821206
OGUE01000084
[OGUE] human gut metagenome; fecal sample 1 from infant 5
106
180
+
Asn
GTT
[ENA]
¢þ
>WENV181834559
OGUR01002403
[OGUR] metagenome; Human gut stool
915
841
-
Asn
GTT
[ENA]
¢þ
>WENV181935913
OGYU01046143
[OGYU] human gut metagenome; faeces
556
630
+
Asn
GTT
[ENA]
¢þ
>WENV182108899
OHIM01003882
[OHIM] human gut metagenome; feces
3838
3764
-
Asn
GTT
[ENA]
¢þ
>WENV182132987
OHKF01006164
[OHKF] human gut metagenome; feces
2665
2591
-
Asn
GTT
[ENA]
¢þ
>WENV182407515
OIFD01000066
[OIFD] human gut metagenome; stool
103496
103422
-
Asn
GTT
[ENA]
¢þ
>WENV182409733
OIFJ01000154
[OIFJ] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182410136
OIFK01000131
[OIFK] human gut metagenome; stool
85
159
+
Asn
GTT
[ENA]
¢þ
>WENV182410796
OIFM01000050
[OIFM] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182411765
OIFQ01000042
[OIFQ] human gut metagenome; stool
103312
103238
-
Asn
GTT
[ENA]
¢þ
>WENV182826980
OKCW01001391
[OKCW] human gut metagenome; human gut
1919
1845
-
Asn
GTT
[ENA]
¢þ
>WENV182827679
OKDB01003757
[OKDB] human gut metagenome; human gut
95
169
+
Asn
GTT
[ENA]
¢þ
>WENV182855819
OKNE01002632
[OKNE] human gut metagenome; human gut
877
803
-
Asn
GTT
[ENA]
¢þ
>WENV182856676
OKNP01001107
[OKNP] human gut metagenome; human gut
2796
2722
-
Asn
GTT
[ENA]
¢þ
>WENV182864158
OKPZ01000658
[OKPZ] human gut metagenome; human gut
2308
2382
+
Asn
GTT
[ENA]
¢þ
>WENV182865057
OKQH01001933
[OKQH] human gut metagenome; human gut
842
768
-
Asn
GTT
[ENA]
¢þ
>WENV182946111
OKVK01006473
[OKVK] human gut metagenome; human gut
2438
2512
+
Asn
GTT
[ENA]
¢þ
>WENV182952865
OKVX01000217
[OKVX] human gut metagenome; human gut
32535
32609
+
Asn
GTT
[ENA]
¢þ
>WENV182954804
OKWB01000018
[OKWB] human gut metagenome; stool
223461
223387
-
Asn
GTT
[ENA]
¢þ
>WENV182958996
OKWI01000126
[OKWI] human gut metagenome; stool
39425
39351
-
Asn
GTT
[ENA]
¢þ
>WENV182961135
OKWK01000196
[OKWK] human gut metagenome; stool
50546
50472
-
Asn
GTT
[ENA]
¢þ
>WENV182961811
OKWL01000394
[OKWL] human gut metagenome; stool
19043
18969
-
Asn
GTT
[ENA]
¢þ
>WENV182962304
OKWN01000180
[OKWN] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182962713
OKWO01000042
[OKWO] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182963321
OKWQ01000094
[OKWQ] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182965745
OKWT01000117
[OKWT] human gut metagenome; stool
117
191
+
Asn
GTT
[ENA]
¢þ
>WENV182967166
OKWZ01000052
[OKWZ] human gut metagenome; stool
113307
113233
-
Asn
GTT
[ENA]
¢þ
>WENV183103439
OLNJ01000502
[OLNJ] human gut metagenome; faeces
20455
20529
+
Asn
GTT
[ENA]
¢þ
>WENV183112645
OLNP01001333
[OLNP] human gut metagenome; faeces
17405
17479
+
Asn
GTT
[ENA]
¢þ
>WENV183520131
OMNT01005986
[OMNT] human gut metagenome; faeces
4883
4809
-
Asn
GTT
[ENA]
¢þ
>WENV183607772
OODO01060826
[OODO] human gut metagenome; human gut
26
100
+
Asn
GTT
[ENA]
¢þ
>WENV170016636
AZMM01018827
[AZMM] human gut metagenome; premature infant gut
139
213
+
Asn
GTT
[ENA]
¢þ
>W141427476
JENL01000002
Bacillota
Clostridium novyi A str. 4540 [JENL]
4180
4106
-
Asn
GTT
[ENA]
¡û
>W141428283
JENV01000030
Bacillota
Clostridium novyi B str. NCTC 9691 [JENV]
42930
42856
-
Asn
GTT
[ENA]
¡û
>C191012376
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
192413
192487
+
Asn
GTT
-
¡û
>C191012377
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
192515
192589
+
Asn
GTT
-
¡û
>C191012432
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2487346
2487272
-
Asn
GTT
-
¡û
>W1911493623
OBIP01000006
Bacillota
Clostridium paraputrificum LH141 [OBIP]
194
268
+
Asn
GTT
[ENA]
¡û
>W1911493730
OBIQ01000041
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
187
261
+
Asn
GTT
[ENA]
¡û
>W1911493901
OBJN01000013
Bacillota
Clostridium paraputrificum LH025 [OBJN]
59752
59678
-
Asn
GTT
[ENA]
¡û
>W1810604883
QGMT01000025
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
187
261
+
Asn
GTT
[ENA]
¡û
>W1530001130
CCXI01000126
Bacillota
Clostridium polynesiense MS1 [CCXI]
15493
15419
-
Asn
GTT
[ENA]
¡û
>W1510060456
CCXI01000085
Bacillota
Clostridium polynesiense MS1 [CCXI]
1725
1651
-
Asn
GTT
[ENA]
¡û
>W1511445739
JUWA01000046
Bacillota
Clostridium botulinum 713_CBOT [JUWA]
39628
39554
-
Asn
GTT
[ENA]
¡û
>W11146091
AESA01000029
Bacillota
Clostridium botulinum C str. Stockholm [AESA]
13339
13413
+
Asn
GTT
[ENA]
¡û
>W11146109
AESA01000301
Bacillota
Clostridium botulinum C str. Stockholm [AESA]
2174
2100
-
Asn
GTT
[ENA]
¡û
>W11177348
AGAG01000005
Bacillota
Candidatus Arthromitus sp. SFB-mouse sp. SFB-mouse-NYU [AGAG]
4922
4848
-
Asn
GTT
[ENA]
¡û
>C161023436
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
140451
140525
+
Asn
GTT
[Ensembl]
¡û
>C161023437
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
140760
140834
+
Asn
GTT
[Ensembl]
¡û
>C161023438
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
141274
141348
+
Asn
GTT
[Ensembl]
¡û
>C161023466
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
421103
421177
+
Asn
GTT
[Ensembl]
¡û
>C161023481
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
2345896
2345970
+
Asn
GTT
[Ensembl]
¡û
>C161023482
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
2357618
2357692
+
Asn
GTT
[Ensembl]
¡û
>W1610101671
CYZW01000005
Bacillota
Clostridium paraputrificum [CYZW]
223819
223745
-
Asn
GTT
[ENA]
¡û
>W1610104329
CZBQ01000005
Bacillota
Clostridium paraputrificum [CZBQ]
234420
234346
-
Asn
GTT
[ENA]
¡û
>W1611056169
MAPZ01000035
Bacillota
Clostridium paraputrificum [MAPZ]
85254
85180
-
Asn
GTT
[ENA]
¡û
>W1611062439
MBAF01000002
Bacillota
Clostridium beijerinckii [MBAF]
2694
2768
+
Asn
GTT
[ENA]
¡û
>W1611062469
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
120326
120400
+
Asn
GTT
[ENA]
¡û
>W1611062470
MBAF01000017
Bacillota
Clostridium beijerinckii [MBAF]
120636
120710
+
Asn
GTT
[ENA]
¡û
>W1710104426
CYZW01000005
Bacillota
Clostridium paraputrificum [CYZW]
223819
223745
-
Asn
GTT
[ENA]
¡û
>W1710107033
CZBQ01000005
Bacillota
Clostridium paraputrificum [CZBQ]
234420
234346
-
Asn
GTT
[ENA]
¡û
>W1710558907
FOMG01000002
Bacillota
Clostridium uliginosum [FOMG]
274136
274062
-
Asn
GTT
[ENA]
¡û
>W1710558953
FOMG01000007
Bacillota
Clostridium uliginosum [FOMG]
9977
9903
-
Asn
GTT
[ENA]
¡û
>W1710558954
FOMG01000007
Bacillota
Clostridium uliginosum [FOMG]
9522
9448
-
Asn
GTT
[ENA]
¡û
>W1710578938
FPBY01000219
Bacillota
Clostridium sp. DSM 8431 [FPBY]
4971
4897
-
Asn
GTT
[ENA]
¡û
>W1710588710
FQZO01000007
Bacillota
Clostridium amylolyticum [FQZO]
22608
22534
-
Asn
GTT
[ENA]
¡û
>W1710588712
FQZO01000008
Bacillota
Clostridium amylolyticum [FQZO]
167804
167730
-
Asn
GTT
[ENA]
¡û
>W1710588715
FQZO01000009
Bacillota
Clostridium amylolyticum [FQZO]
133827
133753
-
Asn
GTT
[ENA]
¡û
>W1710754921
LHYQ01000062
Bacillota
Clostridium botulinum [LHYQ]
3758
3684
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK