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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344531 (88 seq.)
>W1710861346
LMDN01000006
Actinomycetota
Leifsonia sp. Root4 [LMDN]
56427
56499
+
Gly
GCC
[ENA]
¡û
>W1710870330
LMKK01000003
Actinomycetota
Agreia sp. Leaf210 [LMKK]
568732
568806
+
Gly
GCC
[ENA]
¡û
>W1710872356
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
381332
381406
+
Gly
GCC
[ENA]
¡û
>W1710873980
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
286731
286657
-
Gly
GCC
[ENA]
¡û
>W1710875761
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
230312
230238
-
Gly
GCC
[ENA]
¡û
>W131208648
ATIA01000111
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
57590
57516
-
Gly
GCC
[ENA]
¡û
>w013987
AAOB01000016
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
11902
11831
-
Gly
GCC
[ENA]
¡û
>WENV180030691
FTJN01003090
[FTJN] metagenome; soil
2993
2921
-
Gly
GCC
[ENA]
¢þ
>WENV180102785
OAOZ01014894
[OAOZ] marine metagenome; ENVO:00002010
512
584
+
Gly
GCC
[ENA]
¢þ
>WENV180114474
OAPS01011269
[OAPS] marine metagenome; sea water
659
587
-
Gly
GCC
[ENA]
¢þ
>WENV180383913
OBOV01076339
[OBOV] marine metagenome; ENV:00002010
43
115
+
Gly
GCC
[ENA]
¢þ
>WENV180389559
OBPJ01044771
[OBPJ] marine metagenome; seawater
212
140
-
Gly
GCC
[ENA]
¢þ
>WENV180399113
OBQG01000159
[OBQG] marine metagenome; ENV:00002010
1931
2003
+
Gly
GCC
[ENA]
¢þ
>WENV180399276
OBQH01000183
[OBQH] marine metagenome; ENV:00002010
1106
1178
+
Gly
GCC
[ENA]
¢þ
>WENV180399511
OBQO01000044
[OBQO] marine metagenome; ENVO:00002010
5055
4983
-
Gly
GCC
[ENA]
¢þ
>WENV180650358
OCSY01012032
[OCSY] marine metagenome; 30 L Plastic container
371
443
+
Gly
GCC
[ENA]
¢þ
>WENV181162970
OEIO01050002
[OEIO] marine metagenome; sea ice
476
404
-
Gly
GCC
[ENA]
¢þ
>WENV181167014
OEIU01006438
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4779
4707
-
Gly
GCC
[ENA]
¢þ
>WENV181313842
OFJH01013198
[OFJH] marine metagenome; seawater
218
290
+
Gly
GCC
[ENA]
¢þ
>WENV181322070
OFKP01003137
[OFKP] marine metagenome; sea ice
341
269
-
Gly
GCC
[ENA]
¢þ
>WENV181324123
OFLC01000180
[OFLC] marine metagenome; melt pond
2934
3006
+
Gly
GCC
[ENA]
¢þ
>WENV181324503
OFLF01000120
[OFLF] marine metagenome; melt pond
3027
2955
-
Gly
GCC
[ENA]
¢þ
>WENV181324856
OFLH01019156
[OFLH] marine metagenome; sea ice
115
43
-
Gly
GCC
[ENA]
¢þ
>WENV181385839
OFRK01020107
[OFRK] marine metagenome; sea ice
174
246
+
Gly
GCC
[ENA]
¢þ
>WENV181392982
OFRX01026212
[OFRX] seawater metagenome; seawater
418
490
+
Gly
GCC
[ENA]
¢þ
>WENV183614916
OOEA01011010
[OOEA] marine metagenome; sea ice
99
27
-
Gly
GCC
[ENA]
¢þ
>WENV183617216
OOEE01100692
[OOEE] marine metagenome; sea ice
205
133
-
Gly
GCC
[ENA]
¢þ
>WENV183620940
OOFT01000255
[OOFT] marine metagenome; sea ice
2827
2899
+
Gly
GCC
[ENA]
¢þ
>WENV183623230
OOFX01038274
[OOFX] marine metagenome; sea ice
207
279
+
Gly
GCC
[ENA]
¢þ
>WENV183629347
OOGP01026624
[OOGP] marine metagenome; seawater
418
490
+
Gly
GCC
[ENA]
¢þ
>WENV170567422
FLMP01000425
[FLMP] seawater metagenome; seawater
9503
9431
-
Gly
GCC
[ENA]
¢þ
>WENV170600720
FUWD010139888
[FUWD] metagenome; unknown
140
214
+
Gly
GCC
[ENA]
¢þ
>WENV170614487
FUWD012834969
[FUWD] metagenome; unknown
1056
984
-
Gly
GCC
[ENA]
¢þ
>WENV170614490
FUWD012834970
[FUWD] metagenome; unknown
288
216
-
Gly
GCC
[ENA]
¢þ
>WENV170618541
FUWD012973477
[FUWD] metagenome; unknown
156
82
-
Gly
GCC
[ENA]
¢þ
>WENV170619960
FUWD013023621
[FUWD] metagenome; unknown
1845
1773
-
Gly
GCC
[ENA]
¢þ
>WENV170626315
FUWD013219083
[FUWD] metagenome; unknown
1590
1516
-
Gly
GCC
[ENA]
¢þ
>WENV170628091
FUWD013241673
[FUWD] metagenome; unknown
1845
1773
-
Gly
GCC
[ENA]
¢þ
>WENV170951612
MEHZ011561481
[MEHZ] marine metagenome; marine surface water
107
179
+
Gly
GCC
[ENA]
¢þ
>C181002036
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
524203
524275
+
Gly
GCC
-
¡û
>C181092807
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
758153
758225
+
Gly
GCC
-
¡û
>C181143997
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1430489
1430417
-
Gly
GCC
-
¡û
>C181194478
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
878040
877968
-
Gly
GCC
-
¡û
>C191139353
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
655876
655804
-
Gly
GCC
-
¡û
>W141766587
JOEB01000003
Actinomycetota
Mycetocola saprophilus [JOEB]
529744
529672
-
Gly
GCC
[ENA]
¡û
>W141766588
JOEB01000003
Actinomycetota
Mycetocola saprophilus [JOEB]
529462
529390
-
Gly
GCC
[ENA]
¡û
>W141766590
JOEB01000003
Actinomycetota
Mycetocola saprophilus [JOEB]
528897
528823
-
Gly
GCC
[ENA]
¡û
>W141766607
JOEC01000001
Actinomycetota
Mycetocola saprophilus [JOEC]
712510
712582
+
Gly
GCC
[ENA]
¡û
>W141766608
JOEC01000001
Actinomycetota
Mycetocola saprophilus [JOEC]
712792
712864
+
Gly
GCC
[ENA]
¡û
>W141766610
JOEC01000001
Actinomycetota
Mycetocola saprophilus [JOEC]
713357
713431
+
Gly
GCC
[ENA]
¡û
>W141767698
JOET01000787
Actinomycetota
Streptomyces rimosus subsp. rimosus [JOET]
220
292
+
Gly
GCC
[ENA]
¡û
>W1910857520
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
2060319
2060247
-
Gly
GCC
[ENA]
¡û
>W1910857554
NBXA01000021
Actinomycetota
Subtercola boreus P27444 [NBXA]
180999
180927
-
Gly
GCC
[ENA]
¡û
>W1910857599
NBXB01000027
Actinomycetota
Subtercola boreus P27479 [NBXB]
197586
197514
-
Gly
GCC
[ENA]
¡û
>W1910857638
NBXC01000014
Actinomycetota
Subtercola boreus P27924 [NBXC]
441340
441268
-
Gly
GCC
[ENA]
¡û
>W1910857681
NBXD01000014
Actinomycetota
Subtercola boreus P27979 [NBXD]
441350
441278
-
Gly
GCC
[ENA]
¡û
>W1910857724
NBXE01000019
Actinomycetota
Subtercola boreus P28004 [NBXE]
441352
441280
-
Gly
GCC
[ENA]
¡û
>W1911798578
QYRT01000011
Actinomycetota
Subtercola vilae DB165 [QYRT]
17559
17631
+
Gly
GCC
[ENA]
¡û
>W1810090200
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1554155
1554227
+
Gly
GCC
[ENA]
¡û
>W1810169217
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
176346
176418
+
Gly
GCC
[ENA]
¡û
>W1810277316
PSTT01000040
Actinomycetota
Subtercola sp. Z020 [PSTT]
9767
9839
+
Gly
GCC
[ENA]
¡û
>W1810281977
PSXW01000003
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
57140
57068
-
Gly
GCC
[ENA]
¡û
>W1810568864
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
430799
430727
-
Gly
GCC
[ENA]
¡û
>SRA1024665
SRR035084.372476
454 Sequencing (SRP001805)
436
364
-
Gly
GCC
[SRA]
>SRA1025178
SRR035084.509315
454 Sequencing (SRP001805)
151
79
-
Gly
GCC
[SRA]
>SRA1045927
SRR035093.201241
454 Sequencing (SRP001814)
228
300
+
Gly
GCC
[SRA]
>SRA1046132
SRR035093.242475
454 Sequencing (SRP001814)
103
31
-
Gly
GCC
[SRA]
>SRA1046235
SRR035093.259237
454 Sequencing (SRP001814)
125
53
-
Gly
GCC
[SRA]
>SRA1046981
SRR035093.429557
454 Sequencing (SRP001814)
421
349
-
Gly
GCC
[SRA]
>SRA1047505
SRR035093.560469
454 Sequencing (SRP001814)
79
151
+
Gly
GCC
[SRA]
>SRA1047592
SRR035093.594172
454 Sequencing (SRP001814)
103
31
-
Gly
GCC
[SRA]
>SRA1053595
SRR035098.447902
454 Sequencing (SRP001819)
155
83
-
Gly
GCC
[SRA]
>W1511524501
JYFC01000001
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
66876
66802
-
Gly
GCC
[ENA]
¡û
>WENV055411
AACY023226099
Marine microbial communities from Global Ocean Sampling (GOS)
1563
1637
+
Gly
GCC
[ENA]
>C161067230
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
1110901
1110973
+
Gly
GCC
[Ensembl]
¡û
>W121063479
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
199995
199923
-
Gly
GCC
[ENA]
¡û
>W121043540
AHWA01000002
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
392812
392738
-
Gly
GCC
[ENA]
¡û
>W1610625729
LIBA01000117
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
257
185
-
Gly
GCC
[ENA]
¡û
>W1610723692
LMDN01000006
Actinomycetota
Leifsonia sp. Root4 [LMDN]
56427
56499
+
Gly
GCC
[ENA]
¡û
>W1610732676
LMKK01000003
Actinomycetota
Agreia sp. Leaf210 [LMKK]
568732
568806
+
Gly
GCC
[ENA]
¡û
>W1610734702
LMLX01000005
Actinomycetota
Agreia sp. Leaf244 [LMLX]
381332
381406
+
Gly
GCC
[ENA]
¡û
>W1610736326
LMNF01000002
Actinomycetota
Agreia sp. Leaf283 [LMNF]
286731
286657
-
Gly
GCC
[ENA]
¡û
>W1610738107
LMOQ01000002
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
230312
230238
-
Gly
GCC
[ENA]
¡û
>W1710532027
FNPZ01000002
Actinomycetota
Herbiconiux ginsengi [FNPZ]
210943
211017
+
Gly
GCC
[ENA]
¡û
>W1710602493
FUYG01000002
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
165607
165533
-
Gly
GCC
[ENA]
¡û
>W1710608532
FXAY01000003
Actinomycetota
Agreia pratensis [FXAY]
375315
375389
+
Gly
GCC
[ENA]
¡û
>W1710609307
FXWI01000002
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
288538
288464
-
Gly
GCC
[ENA]
¡û
>W1710756856
LIBA01000117
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
257
185
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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