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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.344824 (120 seq.)
>W141042784
AMEU01000203
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
16219
16147
-
Arg
CCG
[ENA]
¡û
>WENV180697689
ODDE01002899
[ODDE] human metagenome; G_DNA_Supragingival plaque
2038
1966
-
Arg
CCG
[ENA]
¢þ
>WENV180698511
ODDH01009296
[ODDH] human metagenome; G_DNA_Buccal mucosa
359
287
-
Arg
CCG
[ENA]
¢þ
>WENV180718024
ODGE01033745
[ODGE] human metagenome; G_DNA_Buccal mucosa
185
113
-
Arg
CCG
[ENA]
¢þ
>WENV180718400
ODGG01000754
[ODGG] human metagenome; G_DNA_Buccal mucosa
2242
2170
-
Arg
CCG
[ENA]
¢þ
>WENV180720319
ODGJ01033009
[ODGJ] human metagenome; G_DNA_Tongue dorsum
280
352
+
Arg
CCG
[ENA]
¢þ
>WENV180721935
ODGL01033554
[ODGL] human metagenome; G_DNA_Subgingival plaque
130
202
+
Arg
CCG
[ENA]
¢þ
>WENV180727177
ODGU01002819
[ODGU] human metagenome; G_DNA_Supragingival plaque
2397
2325
-
Arg
CCG
[ENA]
¢þ
>WENV180732855
ODGY01005828
[ODGY] human metagenome; G_DNA_Supragingival plaque
2584
2656
+
Arg
CCG
[ENA]
¢þ
>WENV180734378
ODGZ01007252
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2436
2508
+
Arg
CCG
[ENA]
¢þ
>WENV180735997
ODHB01002895
[ODHB] human metagenome; G_DNA_Supragingival plaque
4349
4421
+
Arg
CCG
[ENA]
¢þ
>WENV180738481
ODHD01000048
[ODHD] human metagenome; G_DNA_Supragingival plaque
18802
18730
-
Arg
CCG
[ENA]
¢þ
>WENV180751745
ODHS01139284
[ODHS] human metagenome; G_DNA_Supragingival plaque
239
311
+
Arg
CCG
[ENA]
¢þ
>WENV180754866
ODHU01001988
[ODHU] human metagenome; G_DNA_Supragingival plaque
136
208
+
Arg
CCG
[ENA]
¢þ
>WENV180764936
ODIB01006440
[ODIB] human metagenome; G_DNA_Supragingival plaque
642
714
+
Arg
CCG
[ENA]
¢þ
>WENV180767393
ODIG01000020
[ODIG] human metagenome; G_DNA_Tongue dorsum
97719
97791
+
Arg
CCG
[ENA]
¢þ
>WENV180777861
ODIM01000008
[ODIM] human metagenome; G_DNA_Supragingival plaque
99741
99669
-
Arg
CCG
[ENA]
¢þ
>WENV180781637
ODIP01001517
[ODIP] human metagenome; G_DNA_Supragingival plaque
1819
1747
-
Arg
CCG
[ENA]
¢þ
>WENV180784051
ODIQ01101759
[ODIQ] human metagenome; G_DNA_Tongue dorsum
149
77
-
Arg
CCG
[ENA]
¢þ
>WENV180787655
ODIS01010823
[ODIS] human metagenome; G_DNA_Supragingival plaque
2939
3011
+
Arg
CCG
[ENA]
¢þ
>WENV180791124
ODIT01118253
[ODIT] human metagenome; G_DNA_Tongue dorsum
124
52
-
Arg
CCG
[ENA]
¢þ
>WENV180796854
ODJB01016399
[ODJB] human metagenome; G_DNA_Supragingival plaque
2452
2524
+
Arg
CCG
[ENA]
¢þ
>WENV180800543
ODJD01000115
[ODJD] human metagenome; G_DNA_Supragingival plaque
35009
34937
-
Arg
CCG
[ENA]
¢þ
>WENV180803744
ODJG01000033
[ODJG] human metagenome; G_DNA_Supragingival plaque
102245
102173
-
Arg
CCG
[ENA]
¢þ
>WENV180806808
ODJI01000035
[ODJI] human metagenome; G_DNA_Tongue dorsum
37695
37623
-
Arg
CCG
[ENA]
¢þ
>WENV180808786
ODJK01001072
[ODJK] human metagenome; G_DNA_Subgingival plaque
12312
12240
-
Arg
CCG
[ENA]
¢þ
>WENV180813152
ODJO01000062
[ODJO] human metagenome; G_DNA_Supragingival plaque
19504
19432
-
Arg
CCG
[ENA]
¢þ
>WENV180813226
ODJO01000175
[ODJO] human metagenome; G_DNA_Supragingival plaque
25494
25422
-
Arg
CCG
[ENA]
¢þ
>WENV180822111
ODJT01000018
[ODJT] human metagenome; G_DNA_Supragingival plaque
64643
64715
+
Arg
CCG
[ENA]
¢þ
>WENV180823898
ODJX01000004
[ODJX] human metagenome; G_DNA_Supragingival plaque
47220
47148
-
Arg
CCG
[ENA]
¢þ
>WENV180832289
ODKC01000975
[ODKC] human metagenome; G_DNA_Supragingival plaque
17378
17306
-
Arg
CCG
[ENA]
¢þ
>WENV180834142
ODKD01004173
[ODKD] human metagenome; G_DNA_Supragingival plaque
3320
3392
+
Arg
CCG
[ENA]
¢þ
>WENV180841889
ODKK01021617
[ODKK] human metagenome; G_DNA_Buccal mucosa
303
231
-
Arg
CCG
[ENA]
¢þ
>WENV180843584
ODKN01005558
[ODKN] human metagenome; G_DNA_Supragingival plaque
4074
4146
+
Arg
CCG
[ENA]
¢þ
>WENV180846379
ODKT01009883
[ODKT] human metagenome; G_DNA_Supragingival plaque
1304
1232
-
Arg
CCG
[ENA]
¢þ
>WENV180852211
ODKW01000098
[ODKW] human metagenome; G_DNA_Tongue dorsum
7916
7988
+
Arg
CCG
[ENA]
¢þ
>WENV180859726
ODLD01003028
[ODLD] human metagenome; G_DNA_Supragingival plaque
4397
4469
+
Arg
CCG
[ENA]
¢þ
>WENV180860888
ODLE01000229
[ODLE] human metagenome; G_DNA_Tongue dorsum
6748
6820
+
Arg
CCG
[ENA]
¢þ
>WENV180864518
ODLH01054221
[ODLH] human metagenome; G_DNA_Tongue dorsum
476
404
-
Arg
CCG
[ENA]
¢þ
>WENV180887660
ODMI01060865
[ODMI] human metagenome; G_DNA_Buccal mucosa
179
107
-
Arg
CCG
[ENA]
¢þ
>WENV180888108
ODMN01000065
[ODMN] human metagenome; G_DNA_Supragingival plaque
70081
70153
+
Arg
CCG
[ENA]
¢þ
>WENV180891454
ODMQ01000180
[ODMQ] human metagenome; G_DNA_Supragingival plaque
12153
12081
-
Arg
CCG
[ENA]
¢þ
>WENV180900942
ODOJ01018230
[ODOJ] human metagenome; G_DNA_Tongue dorsum
706
634
-
Arg
CCG
[ENA]
¢þ
>WENV180921572
ODTJ01000141
[ODTJ] human metagenome; G_DNA_Supragingival plaque
80037
80109
+
Arg
CCG
[ENA]
¢þ
>WENV180923501
ODTK01000006
[ODTK] human metagenome; G_DNA_Supragingival plaque
160068
159996
-
Arg
CCG
[ENA]
¢þ
>WENV180925038
ODTK01032506
[ODTK] human metagenome; G_DNA_Supragingival plaque
1
73
+
Arg
CCG
[ENA]
¢þ
>WENV180928052
ODTM01011754
[ODTM] human metagenome; G_DNA_Supragingival plaque
1535
1463
-
Arg
CCG
[ENA]
¢þ
>WENV180932219
ODTP01032487
[ODTP] human metagenome; G_DNA_Tongue dorsum
580
652
+
Arg
CCG
[ENA]
¢þ
>WENV180933221
ODTQ01055003
[ODTQ] human metagenome; G_DNA_Buccal mucosa
204
132
-
Arg
CCG
[ENA]
¢þ
>WENV180933894
ODTR01005121
[ODTR] human metagenome; G_DNA_Supragingival plaque
963
1035
+
Arg
CCG
[ENA]
¢þ
>WENV180934961
ODTS01014398
[ODTS] human metagenome; G_DNA_Subgingival plaque
204
276
+
Arg
CCG
[ENA]
¢þ
>WENV180937361
ODTV01094793
[ODTV] human metagenome; G_DNA_Buccal mucosa
159
87
-
Arg
CCG
[ENA]
¢þ
>WENV180937730
ODTX01000046
[ODTX] human metagenome; G_DNA_Supragingival plaque
31881
31809
-
Arg
CCG
[ENA]
¢þ
>WENV180944455
ODUC01018078
[ODUC] human metagenome; G_DNA_Supragingival plaque
144
72
-
Arg
CCG
[ENA]
¢þ
>WENV180951175
ODUH01011245
[ODUH] human metagenome; G_DNA_Subgingival plaque
332
404
+
Arg
CCG
[ENA]
¢þ
>WENV180954586
ODUJ01004344
[ODUJ] human metagenome; G_DNA_Tongue dorsum
3133
3205
+
Arg
CCG
[ENA]
¢þ
>WENV180958339
ODUL01003126
[ODUL] human metagenome; G_DNA_Supragingival plaque
1896
1968
+
Arg
CCG
[ENA]
¢þ
>WENV180960688
ODUM01133120
[ODUM] human metagenome; G_DNA_Tongue dorsum
166
94
-
Arg
CCG
[ENA]
¢þ
>WENV180965044
ODUO01105075
[ODUO] human metagenome; G_DNA_Supragingival plaque
200
128
-
Arg
CCG
[ENA]
¢þ
>WENV180973178
ODUW01001769
[ODUW] human metagenome; G_DNA_Supragingival plaque
3355
3283
-
Arg
CCG
[ENA]
¢þ
>WENV180976418
ODUY01103120
[ODUY] human metagenome; G_DNA_Supragingival plaque
323
395
+
Arg
CCG
[ENA]
¢þ
>WENV180977290
ODUZ01000204
[ODUZ] human metagenome; G_DNA_Tongue dorsum
7775
7847
+
Arg
CCG
[ENA]
¢þ
>WENV180981105
ODVE01007008
[ODVE] human metagenome; G_DNA_Supragingival plaque
2445
2517
+
Arg
CCG
[ENA]
¢þ
>WENV180983855
ODVF01047321
[ODVF] human metagenome; G_DNA_Supragingival plaque
517
589
+
Arg
CCG
[ENA]
¢þ
>WENV180984938
ODVJ01000168
[ODVJ] human metagenome; G_DNA_Tongue dorsum
36809
36737
-
Arg
CCG
[ENA]
¢þ
>WENV180987046
ODVK01003828
[ODVK] human metagenome; G_DNA_Supragingival plaque
4336
4408
+
Arg
CCG
[ENA]
¢þ
>WENV180989723
ODVN01000039
[ODVN] human metagenome; G_DNA_Tongue dorsum
97424
97496
+
Arg
CCG
[ENA]
¢þ
>WENV180991996
ODVO01018254
[ODVO] human metagenome; G_DNA_Buccal mucosa
539
467
-
Arg
CCG
[ENA]
¢þ
>WENV180999648
ODVT01042952
[ODVT] human metagenome; G_DNA_Buccal mucosa
517
589
+
Arg
CCG
[ENA]
¢þ
>WENV181003166
ODVX01006109
[ODVX] human metagenome; G_DNA_Supragingival plaque
4615
4687
+
Arg
CCG
[ENA]
¢þ
>WENV181005826
ODWA01000008
[ODWA] human metagenome; G_DNA_Buccal mucosa
74615
74543
-
Arg
CCG
[ENA]
¢þ
>WENV181007516
ODWE01000165
[ODWE] human metagenome; G_DNA_Supragingival plaque
37794
37866
+
Arg
CCG
[ENA]
¢þ
>WENV181010561
ODWH01061195
[ODWH] human metagenome; G_DNA_Buccal mucosa
161
233
+
Arg
CCG
[ENA]
¢þ
>WENV181012433
ODWK01000310
[ODWK] human metagenome; G_DNA_Supragingival plaque
25
97
+
Arg
CCG
[ENA]
¢þ
>WENV181018698
ODWU01000028
[ODWU] human metagenome; G_DNA_Supragingival plaque
34443
34371
-
Arg
CCG
[ENA]
¢þ
>WENV181025677
ODXB01013727
[ODXB] human metagenome; G_DNA_Buccal mucosa
166
94
-
Arg
CCG
[ENA]
¢þ
>WENV181027939
ODXD01136516
[ODXD] human metagenome; G_DNA_Buccal mucosa
117
45
-
Arg
CCG
[ENA]
¢þ
>WENV181029215
ODXF01000015
[ODXF] human metagenome; G_DNA_Supragingival plaque
46848
46776
-
Arg
CCG
[ENA]
¢þ
>WENV181042098
ODXS01163964
[ODXS] human metagenome; G_DNA_Tongue dorsum
34
106
+
Arg
CCG
[ENA]
¢þ
>WENV181042408
ODXU01000027
[ODXU] human metagenome; G_DNA_Buccal mucosa
60970
61042
+
Arg
CCG
[ENA]
¢þ
>WENV181043642
ODXV01000272
[ODXV] human metagenome; G_DNA_Tongue dorsum
26374
26302
-
Arg
CCG
[ENA]
¢þ
>WENV181050796
ODYD01063442
[ODYD] human metagenome; G_DNA_Supragingival plaque
74
2
-
Arg
CCG
[ENA]
¢þ
>WENV181059294
ODYM01000477
[ODYM] human metagenome; G_DNA_Tongue dorsum
615
543
-
Arg
CCG
[ENA]
¢þ
>WENV181064094
ODYP01009908
[ODYP] human metagenome; G_DNA_Supragingival plaque
2433
2505
+
Arg
CCG
[ENA]
¢þ
>WENV181066902
ODZI01003232
[ODZI] human metagenome; G_DNA_Supragingival plaque
3961
3889
-
Arg
CCG
[ENA]
¢þ
>WENV181069960
OEAE01000067
[OEAE] human metagenome; G_DNA_Supragingival plaque
63473
63545
+
Arg
CCG
[ENA]
¢þ
>WENV181076428
OEAP01005197
[OEAP] human metagenome; G_DNA_Supragingival plaque
1507
1435
-
Arg
CCG
[ENA]
¢þ
>WENV181078564
OEAS01000140
[OEAS] human metagenome; G_DNA_Supragingival plaque
52256
52328
+
Arg
CCG
[ENA]
¢þ
>WENV181083343
OEAV01005451
[OEAV] human metagenome; G_DNA_Supragingival plaque
4579
4651
+
Arg
CCG
[ENA]
¢þ
>WENV181084719
OEAX01000030
[OEAX] human metagenome; G_DNA_Tongue dorsum
37695
37623
-
Arg
CCG
[ENA]
¢þ
>WENV181091113
OEBC01013301
[OEBC] human metagenome; G_DNA_Supragingival plaque
1213
1285
+
Arg
CCG
[ENA]
¢þ
>WENV181101096
OECM01002963
[OECM] human metagenome; G_DNA_Buccal mucosa
865
937
+
Arg
CCG
[ENA]
¢þ
>WENV181107514
OEEI01010022
[OEEI] human metagenome; G_DNA_Supragingival plaque
615
543
-
Arg
CCG
[ENA]
¢þ
>WENV181107694
OEEI01016930
[OEEI] human metagenome; G_DNA_Supragingival plaque
1213
1285
+
Arg
CCG
[ENA]
¢þ
>WENV181113774
OEEL01106566
[OEEL] human metagenome; G_DNA_Tongue dorsum
107
179
+
Arg
CCG
[ENA]
¢þ
>WENV181115561
OEEO01137382
[OEEO] human metagenome; G_DNA_Supragingival plaque
140
68
-
Arg
CCG
[ENA]
¢þ
>WENV181121580
OEFL01008854
[OEFL] human metagenome; G_DNA_Supragingival plaque
295
223
-
Arg
CCG
[ENA]
¢þ
>WENV181123496
OEFQ01000005
[OEFQ] human metagenome; G_DNA_Supragingival plaque
96695
96767
+
Arg
CCG
[ENA]
¢þ
>WENV181130405
OEFY01010523
[OEFY] human metagenome; G_DNA_Throat
824
896
+
Arg
CCG
[ENA]
¢þ
>WENV181136644
OEGI01020815
[OEGI] human metagenome; G_DNA_Supragingival plaque
587
659
+
Arg
CCG
[ENA]
¢þ
>WENV181137609
OEGJ01008878
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1063
991
-
Arg
CCG
[ENA]
¢þ
>WENV181140645
OEGT01000020
[OEGT] human metagenome; G_DNA_Throat
97424
97496
+
Arg
CCG
[ENA]
¢þ
>WENV181142978
OEHM01000026
[OEHM] human metagenome; G_DNA_Supragingival plaque
97785
97713
-
Arg
CCG
[ENA]
¢þ
>WENV181146805
OEHQ01026440
[OEHQ] human metagenome; G_DNA_Supragingival plaque
519
591
+
Arg
CCG
[ENA]
¢þ
>WENV181149958
OEHW01000122
[OEHW] human metagenome; G_DNA_Tongue dorsum
7854
7926
+
Arg
CCG
[ENA]
¢þ
>WENV181152415
OEIA01001311
[OEIA] human metagenome; G_DNA_Supragingival plaque
5295
5223
-
Arg
CCG
[ENA]
¢þ
>WENV181156189
OEIE01004830
[OEIE] human metagenome; G_DNA_Supragingival plaque
2434
2506
+
Arg
CCG
[ENA]
¢þ
>WENV181158298
OEIH01000244
[OEIH] human metagenome; G_DNA_Supragingival plaque
19567
19495
-
Arg
CCG
[ENA]
¢þ
>WENV181159837
OEIK01000285
[OEIK] human metagenome; G_DNA_Supragingival plaque
5253
5181
-
Arg
CCG
[ENA]
¢þ
>WENV181178090
OEJS01053324
[OEJS] human metagenome; G_DNA_Supragingival plaque
164
236
+
Arg
CCG
[ENA]
¢þ
>WENV181179584
OEJT01008999
[OEJT] human metagenome; G_DNA_Supragingival plaque
358
286
-
Arg
CCG
[ENA]
¢þ
>WENV181180351
OEJU01000006
[OEJU] human metagenome; G_DNA_Supragingival plaque
97817
97889
+
Arg
CCG
[ENA]
¢þ
>WENV181182190
OEJV01003470
[OEJV] human metagenome; G_DNA_Supragingival plaque
2329
2401
+
Arg
CCG
[ENA]
¢þ
>C181055619
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
1102785
1102857
+
Arg
CCG
-
¡û
>C181063543
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
1041014
1040942
-
Arg
CCG
-
¡û
>C181063723
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
1222270
1222198
-
Arg
CCG
-
¡û
>C181063800
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
2495253
2495325
+
Arg
CCG
-
¡û
>C191212289
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
1073416
1073344
-
Arg
CCG
-
¡û
>W09114693
ABZV01000010
Bacteroidota
Capnocytophaga sputigena Capno [ABZV]
47436
47362
-
Arg
CCG
[ENA]
¡û
>W1910919088
NIBW01000002
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
1596856
1596784
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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