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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.345454 (57 seq.)
>W1710893721
LNFA01000260
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
27382
27308
-
Thr
GGT
[ENA]
¡û
>W1711501639
MKRV01000316
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
32509
32583
+
Thr
GGT
[ENA]
¡û
>WENV180351672
OBLQ010085148
[OBLQ] soil metagenome; soil
94
168
+
Thr
GGT
[ENA]
¢þ
>WENV180380874
OBOR01041209
[OBOR] marine metagenome; ENVO 00002227
419
493
+
Thr
GGT
[ENA]
¢þ
>W141055089
AOLV01000010
Alphaproteobacteria
Rubellimicrobium thermophilum DSM 16684 [AOLV]
205558
205632
+
Thr
GGT
[ENA]
¡û
>WENV180690280
OCZS010001777
[OCZS] soil metagenome; soil
6069
5995
-
Thr
GGT
[ENA]
¢þ
>WENV181167175
OEIU01012386
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3184
3110
-
Thr
GGT
[ENA]
¢þ
>WENV181167207
OEIU01013959
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
799
725
-
Thr
GGT
[ENA]
¢þ
>WENV181167309
OEIU01019422
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2351
2277
-
Thr
GGT
[ENA]
¢þ
>WENV181167401
OEIU01025426
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1998
1924
-
Thr
GGT
[ENA]
¢þ
>WENV181167480
OEIU01032713
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
226
300
+
Thr
GGT
[ENA]
¢þ
>WENV181167885
OEIU01095499
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1
75
+
Thr
GGT
[ENA]
¢þ
>WENV182409102
OIFG01001777
[OIFG] human gut metagenome; stool
2738
2664
-
Thr
GGT
[ENA]
¢þ
>W141278413
JAFM01000001
Alphaproteobacteria
Hyphomicrobium sp. 802 [JAFM]
1276164
1276090
-
Thr
GGT
[ENA]
¡û
>WENV182966386
OKWV01004418
[OKWV] human gut metagenome; stool
351
277
-
Thr
GGT
[ENA]
¢þ
>WENV170002346
AGTN01000706
[AGTN] bioreactor metagenome; poplar biomass
25
99
+
Thr
GGT
[ENA]
¢þ
>WENV170531020
CEWK01085841
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
224
150
-
Thr
GGT
[ENA]
¢þ
>WENV170552798
CXWK01002097
[CXWK] wastewater metagenome; activated sludge
214462
214388
-
Thr
GGT
[ENA]
¢þ
>WENV170577875
FSSH01002270
[FSSH] freshwater metagenome; drinking water
48354
48280
-
Thr
GGT
[ENA]
¢þ
>WENV170709161
LNFM01000141
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
125599
125525
-
Thr
GGT
[ENA]
¢þ
>WENV170710000
LNFM01001035
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
40761
40835
+
Thr
GGT
[ENA]
¢þ
>WENV170711265
LNFM01004272
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2183
2257
+
Thr
GGT
[ENA]
¢þ
>WENV170713285
LNFM01027923
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3332
3406
+
Thr
GGT
[ENA]
¢þ
>C181041860
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
4925413
4925487
+
Thr
GGT
-
¡û
>C181041906
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
4980933
4981007
+
Thr
GGT
-
¡û
>C181084412
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
2631890
2631964
+
Thr
GGT
-
¡û
>W09107592
ABJR01000003
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
116547
116621
+
Thr
GGT
[ENA]
¡û
>C191005679
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
3008528
3008602
+
Thr
GGT
-
¡û
>W09135195
ACVL01000002
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
121031
120957
-
Thr
GGT
[ENA]
¡û
>W1910443080
FWFT01000003
Alphaproteobacteria
Pseudooctadecabacter jejudonensis CECT 8397 [FWFT]
264547
264621
+
Thr
GGT
[ENA]
¡û
>W1910499076
FXXQ01000014
Alphaproteobacteria
Boseongicola aestuarii CECT 8489 [FXXQ]
17186
17112
-
Thr
GGT
[ENA]
¡û
>W1910548857
FZOV01000002
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
43962
44036
+
Thr
GGT
[ENA]
¡û
>C09109052
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
2022662
2022736
+
Thr
GGT
[Ensembl]
¡û
>W1911148461
NPEW01000082
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
8262
8336
+
Thr
GGT
[ENA]
¡û
>W1911629500
PSRR01000088
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
22852
22778
-
Thr
GGT
[ENA]
¡û
>W1911702331
QOCQ01000048
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
8738
8812
+
Thr
GGT
[ENA]
¡û
>W1911802544
QYUK01000008
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
315853
315927
+
Thr
GGT
[ENA]
¡û
>W1911809170
QYYC01000034
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
94589
94663
+
Thr
GGT
[ENA]
¡û
>SRA1001849
SRR001308.89703
Metagenomic characterization of a wastewater treatment plant (SRP000180)
224
150
-
Thr
GGT
[SRA]
>W1810116262
PHOB01000026
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
33968
34042
+
Thr
GGT
[ENA]
¡û
>W1810684773
QKYU01000016
Alphaproteobacteria
Humitalea rosea DSM 24525 [QKYU]
16463
16389
-
Thr
GGT
[ENA]
¡û
>ENV09000997
ABSQ01012726
Freshwater sediment metagenome lwMethenol_C1
432
358
-
Thr
GGT
[ENA]
¡û
>W10112813
ADFI01000006
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
216716
216642
-
Thr
GGT
[ENA]
¡û
>W1510072659
CDHO01000003
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
1508789
1508715
-
Thr
GGT
[ENA]
¡û
>C10107538
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
2789775
2789849
+
Thr
GGT
[Ensembl]
¡û
>C11111406
FQ859181
Alphaproteobacteria
Hyphomicrobium sp. MC1 [FQ859181]
648956
648882
-
Thr
GGT
[Ensembl]
¡û
>W11116040
ADFI01000006
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
216716
216642
-
Thr
GGT
[ENA]
¡û
>W11181090
AGIS01000001
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
685016
684942
-
Thr
GGT
[ENA]
¡û
>C131000841
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
892171
892097
-
Thr
GGT
[Ensembl]
¡û
>C131015811
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
2912806
2912880
+
Thr
GGT
[Ensembl]
¡û
>W1610753987
LNFA01000260
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
27382
27308
-
Thr
GGT
[ENA]
¡û
>WENV077348
AAFX01024763
Soil microbial communities from Minnesota Farm
772
698
-
Thr
GGT
[ENA]
>W1710516781
FNCU01000044
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
71747
71821
+
Thr
GGT
[ENA]
¡û
>W1710579340
FPCH01000001
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
497995
497921
-
Thr
GGT
[ENA]
¡û
>W1710586299
FQXB01000006
Alphaproteobacteria
Cognatiyoonia sediminum [FQXB]
144635
144561
-
Thr
GGT
[ENA]
¡û
>W1710600128
FTPS01000001
Alphaproteobacteria
Pontibaca methylaminivorans [FTPS]
234771
234845
+
Thr
GGT
[ENA]
¡û
>W1710600353
FUWJ01000001
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
244260
244186
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK