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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34662 (17 seq.)
>W131104589
APCS01000080
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
3525
3614
+
Ser
CGA
[ENA]
¡û
>C007938
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
607622
607711
+
Ser
CGA
[Ensembl]
¡û
>WENV180231914
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
88374
88285
-
Ser
CGA
[ENA]
¢þ
>WENV180232923
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
88374
88285
-
Ser
CGA
[ENA]
¢þ
>WENV180569640
OCLR01000256
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
31713
31802
+
Ser
CGA
[ENA]
¢þ
>WENV180570681
OCLS01000393
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
8004
8093
+
Ser
CGA
[ENA]
¢þ
>WENV180571283
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
88374
88285
-
Ser
CGA
[ENA]
¢þ
>WENV180573522
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
88374
88285
-
Ser
CGA
[ENA]
¢þ
>WENV180639595
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
88374
88285
-
Ser
CGA
[ENA]
¢þ
>WENV180640523
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
88374
88285
-
Ser
CGA
[ENA]
¢þ
>W141154786
AXLL01000128
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
5832
5743
-
Ser
CGA
[ENA]
¡û
>C181196480
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1673585
1673496
-
Ser
CGA
-
¡û
>W141561450
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
88666
88577
-
Ser
CGA
[ENA]
¡û
>W141702053
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
88551
88462
-
Ser
CGA
[ENA]
¡û
>C10105340
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
607622
607711
+
Ser
CGA
[Ensembl]
¡û
>C11107267
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
607622
607711
+
Ser
CGA
[Ensembl]
¡û
>C161082985
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2117959
2117870
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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