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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347008 (58 seq.)
>W1711174845
LWEK01000167
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
247
322
+
Glu
TTC
[ENA]
¡û
>W1711174870
LWEK01001113
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
7239
7314
+
Glu
TTC
[ENA]
¡û
>W1711174922
LWEK01001985
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
73939
73864
-
Glu
TTC
[ENA]
¡û
>W1711174935
LWEK01002253
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
329
404
+
Glu
TTC
[ENA]
¡û
>W1711176301
LWFH01000302
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
250
175
-
Glu
TTC
[ENA]
¡û
>W1711176326
LWFH01001200
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
43928
43853
-
Glu
TTC
[ENA]
¡û
>W1711176383
LWFI01000911
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
36754
36679
-
Glu
TTC
[ENA]
¡û
>W1711176404
LWFI01001443
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
23795
23720
-
Glu
TTC
[ENA]
¡û
>W1711766708
MUYT01000008
Gammaproteobacteria
Moraxella lincolnii [MUYT]
127833
127758
-
Glu
TTC
[ENA]
¡û
>W1711766714
MUYT01000015
Gammaproteobacteria
Moraxella lincolnii [MUYT]
23407
23332
-
Glu
TTC
[ENA]
¡û
>W131034272
AJRO01000003
Gammaproteobacteria
Vibrio cholerae HC-1A2 [AJRO]
94354
94429
+
Glu
TTC
[ENA]
¡û
>WENV183707910
PDWI01011442
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4
79
+
Glu
TTC
[ENA]
¢þ
>WENV183709897
PDWI01035891
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
276
201
-
Glu
TTC
[ENA]
¢þ
>WENV183710244
PDWI01042353
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2275
2200
-
Glu
TTC
[ENA]
¢þ
>WENV183711009
PDWI01058804
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
232
307
+
Glu
TTC
[ENA]
¢þ
>WENV183711355
PDWI01067552
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
131
206
+
Glu
TTC
[ENA]
¢þ
>WENV183712193
PDWI01091740
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1026
951
-
Glu
TTC
[ENA]
¢þ
>WENV183713261
PDWI01131206
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
455
530
+
Glu
TTC
[ENA]
¢þ
>WENV183713759
PDWI01151664
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
260
333
+
Glu
TTC
[ENA]
¢þ
>WENV183714254
PDWI01175381
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
82
7
-
Glu
TTC
[ENA]
¢þ
>WENV183714314
PDWI01177472
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
222
147
-
Glu
TTC
[ENA]
¢þ
>WENV183714638
PDWI01195432
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
192
267
+
Glu
TTC
[ENA]
¢þ
>WENV183715320
PDWI01233234
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1108
1183
+
Glu
TTC
[ENA]
¢þ
>WENV183715574
PDWI01248222
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1066
991
-
Glu
TTC
[ENA]
¢þ
>WENV183716246
PDWI01296853
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
753
828
+
Glu
TTC
[ENA]
¢þ
>WENV183716680
PDWJ01000132
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
12886
12811
-
Glu
TTC
[ENA]
¢þ
>WENV183716701
PDWJ01000142
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
70936
71011
+
Glu
TTC
[ENA]
¢þ
>WENV183718392
PDWJ01003742
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4465
4540
+
Glu
TTC
[ENA]
¢þ
>WENV183718794
PDWJ01006592
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
22
97
+
Glu
TTC
[ENA]
¢þ
>WENV183719029
PDWJ01008941
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
183
258
+
Glu
TTC
[ENA]
¢þ
>WENV183719205
PDWJ01010733
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1031
1106
+
Glu
TTC
[ENA]
¢þ
>WENV183719238
PDWJ01010984
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3798
3873
+
Glu
TTC
[ENA]
¢þ
>WENV183719782
PDWJ01020220
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2086
2161
+
Glu
TTC
[ENA]
¢þ
>WENV183720690
PDWJ01041740
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2403
2478
+
Glu
TTC
[ENA]
¢þ
>WENV183721275
PDWJ01062086
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1867
1792
-
Glu
TTC
[ENA]
¢þ
>WENV183721865
PDWJ01091826
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
18
93
+
Glu
TTC
[ENA]
¢þ
>WENV183722360
PDWJ01122494
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1118
1043
-
Glu
TTC
[ENA]
¢þ
>WENV170274485
CERM01019994
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
454
529
+
Glu
TTC
[ENA]
¢þ
>C181010978
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
1258726
1258801
+
Glu
TTC
-
¡û
>C181010982
CP011797
Gammaproteobacteria
Reinekea forsetii Hel1_31_D35 [CP011797]
2347269
2347344
+
Glu
TTC
-
¡û
>C181113461
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1574134
1574059
-
Glu
TTC
-
¡û
>C181113462
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1573343
1573268
-
Glu
TTC
-
¡û
>C191188582
CP041202
Gammaproteobacteria
Vibrio parahaemolyticus Vb0624 [CP041201, CP041202]
598426
598501
+
Glu
TTC
-
¡û
>W09109214
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
423632
423707
+
Glu
TTC
[ENA]
¡û
>W09109215
ABUB01000003
Gammaproteobacteria
Kangiella koreensis DSM 16069 [ABUB]
424272
424347
+
Glu
TTC
[ENA]
¡û
>W1910683936
MCXQ01000029
Gammaproteobacteria
Vibrio lentus 10N.261.52.F1 [MCXQ]
32
106
+
Glu
TTC
[ENA]
¡û
>W1911708824
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
275032
274957
-
Glu
TTC
[ENA]
¡û
>W1911708825
QPEP01000004
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
102890
102815
-
Glu
TTC
[ENA]
¡û
>W1911708851
QPEP01000013
Gammaproteobacteria
Salinibius halmophilus WDS2A16A [QPEP]
102870
102945
+
Glu
TTC
[ENA]
¡û
>W11175352
AFWF01000247
Gammaproteobacteria
Vibrio ichthyoenteri ATCC 700023 [AFWF]
310
235
-
Glu
TTC
[ENA]
¡û
>W1610983158
LWEK01000167
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
247
322
+
Glu
TTC
[ENA]
¡û
>W1610983183
LWEK01001113
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
7239
7314
+
Glu
TTC
[ENA]
¡û
>W1610983235
LWEK01001985
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
73939
73864
-
Glu
TTC
[ENA]
¡û
>W1610983248
LWEK01002253
Gammaproteobacteria
Oleiphilus sp. HI0009 [LWEK]
329
404
+
Glu
TTC
[ENA]
¡û
>W1610984614
LWFH01000302
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
250
175
-
Glu
TTC
[ENA]
¡û
>W1610984639
LWFH01001200
Gammaproteobacteria
Oleiphilus sp. HI0066 [LWFH]
43928
43853
-
Glu
TTC
[ENA]
¡û
>W1610984696
LWFI01000911
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
36754
36679
-
Glu
TTC
[ENA]
¡û
>W1610984717
LWFI01001443
Gammaproteobacteria
Oleiphilus sp. HI0067 [LWFI]
23795
23720
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK