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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347236 (49 seq.)
>W1710809804
LKEV01000002
Actinomycetota
Corynebacterium lowii [LKEV]
25726
25652
-
Val
CAC
[ENA]
¡û
>W1710821317
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
598080
598154
+
Val
CAC
[ENA]
¡û
>W1711066549
LSCY01000002
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
332477
332549
+
Val
CAC
[ENA]
¡û
>W1711107372
LTSS01000131
Actinomycetota
Corynebacterium sp. HMSC073D01 [LTSS]
65991
66063
+
Val
CAC
[ENA]
¡û
>W1711187683
LWPR01000025
Actinomycetota
Corynebacterium sp. HMSC04H06 [LWPR]
12932
12858
-
Val
CAC
[ENA]
¡û
>W1711492368
MKKI01000013
Actinomycetota
Corynebacterium sp. CNJ-954 [MKKI]
33217
33291
+
Val
CAC
[ENA]
¡û
>C171001975
CP009247
Actinomycetota
Corynebacterium frankenforstense DSM 45800 ST18 [CP009247]
1135151
1135225
+
Val
CAC
-
¡û
>W131204386
ATBY01000009
Actinomycetota
Corynebacterium pyruviciproducens ATCC BAA-1742 [ATBY]
276503
276575
+
Val
CAC
[ENA]
¡û
>W131215725
ATVG01000001
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
174359
174433
+
Val
CAC
[ENA]
¡û
>WENV180765472
ODIC01000003
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
139465
139393
-
Val
CAC
[ENA]
¢þ
>WENV180878648
ODLX01002201
[ODLX] human metagenome; G_DNA_R_Retroauricular crease
603
675
+
Val
CAC
[ENA]
¢þ
>WENV180984361
ODVG01000049
[ODVG] human metagenome; G_DNA_R_Retroauricular crease
622
694
+
Val
CAC
[ENA]
¢þ
>WENV181131637
OEGD01000125
[OEGD] human metagenome; G_DNA_L_Retroauricular crease
1059
1131
+
Val
CAC
[ENA]
¢þ
>WENV182628963
OJKR01000133
[OJKR] metagenome; surface
4577
4649
+
Val
CAC
[ENA]
¢þ
>WENV182640076
OJLB01000154
[OJLB] metagenome; surface
17180
17108
-
Val
CAC
[ENA]
¢þ
>WENV182643173
OJLS01002628
[OJLS] metagenome; surface
1398
1326
-
Val
CAC
[ENA]
¢þ
>WENV182643755
OJLW01000983
[OJLW] metagenome; surface
11164
11236
+
Val
CAC
[ENA]
¢þ
>WENV182645586
OJLZ01000019
[OJLZ] metagenome; surface
333
405
+
Val
CAC
[ENA]
¢þ
>WENV182803022
OJUH01000107
[OJUH] human gut metagenome; human gut
6812
6740
-
Val
CAC
[ENA]
¢þ
>WENV182820784
OKAP01000127
[OKAP] human gut metagenome; human gut
5588
5516
-
Val
CAC
[ENA]
¢þ
>WENV182835491
OKFO01000025
[OKFO] human gut metagenome; human gut
118751
118679
-
Val
CAC
[ENA]
¢þ
>WENV183724078
PEHZ01030027
[PEHZ] insect metagenome; viral sequences isolated from a pool of bees; samples treated with nuclease to minimize the
5
77
+
Val
CAC
[ENA]
¢þ
>W09113415
ABYP01000073
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51867 [ABYP]
65522
65594
+
Val
CAC
[ENA]
¡û
>W09123833
ACHF01000036
Actinomycetota
Corynebacterium glucuronolyticum ATCC 51866 [ACHF]
129433
129361
-
Val
CAC
[ENA]
¡û
>C181143825
CP026947
Actinomycetota
Corynebacterium yudongzhengii 2183 [CP026947]
1066096
1066168
+
Val
CAC
-
¡û
>C181211284
LS483404
Actinomycetota
Corynebacterium renale NCTC11140 [LS483404]
1662997
1662925
-
Val
CAC
-
¡û
>C181215126
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
2132921
2132849
-
Val
CAC
-
¡û
>C191114651
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
1058830
1058904
+
Val
CAC
-
¡û
>C191138556
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
1058331
1058405
+
Val
CAC
-
¡û
>W141563929
JIAJ01000001
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [JIAJ]
372724
372798
+
Val
CAC
[ENA]
¡û
>W1910339936
FTLL01000028
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
411794
411722
-
Val
CAC
[ENA]
¡û
>C09103351
CP001620
Actinomycetota
Corynebacterium kroppenstedtii DSM 44385 [CP001620]
1239230
1239158
-
Val
CAC
[Ensembl]
¡û
>W1911596623
PNHH01000022
Actinomycetota
Corynebacterium kroppenstedtii UMB0869 [PNHH]
306
234
-
Val
CAC
[ENA]
¡û
>W1810058129
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
1790916
1790988
+
Val
CAC
[ENA]
¡û
>W1810155017
PJAF01000001
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
870
944
+
Val
CAC
[ENA]
¡û
>W1810187420
PKHO01000008
Actinomycetota
Corynebacterium pyruviciproducens UMB0763 [PKHO]
227
155
-
Val
CAC
[ENA]
¡û
>W1810568966
QEEZ01000020
Actinomycetota
Corynebacterium yudongzhengii 2189 [QEEZ]
33117
33189
+
Val
CAC
[ENA]
¡û
>C151013287
CP006842
Actinomycetota
Corynebacterium glyciniphilum AJ 3170 [CP006842]
1729170
1729242
+
Val
CAC
[Ensembl]
¡û
>C151040830
CP008944
Actinomycetota
Corynebacterium atypicum R2070 [CP008944]
973709
973635
-
Val
CAC
[Ensembl]
¡û
>W1511523811
JYCR01000002
Actinomycetota
Corynebacterium kroppenstedtii ITA105 [JYCR]
129886
129958
+
Val
CAC
[ENA]
¡û
>W1511523950
JYDD01000004
Actinomycetota
Corynebacterium kroppenstedtii ITA205 [JYDD]
40769
40841
+
Val
CAC
[ENA]
¡û
>W1511644870
LDYE01000003
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
95784
95712
-
Val
CAC
[ENA]
¡û
>W11164135
AFIZ01000003
Actinomycetota
Corynebacterium nuruki S6-4 [AFIZ]
57376
57448
+
Val
CAC
[ENA]
¡û
>C131005414
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
1778041
1777967
-
Val
CAC
[Ensembl]
¡û
>W1610673859
LKEV01000002
Actinomycetota
Corynebacterium lowii [LKEV]
25726
25652
-
Val
CAC
[ENA]
¡û
>W1610685279
LKST01000001
Actinomycetota
Corynebacterium oculi [LKST]
598080
598154
+
Val
CAC
[ENA]
¡û
>W1610907119
LSCY01000002
Actinomycetota
Corynebacterium kroppenstedtii [LSCY]
332477
332549
+
Val
CAC
[ENA]
¡û
>W1710598775
FTOF01000003
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
305604
305676
+
Val
CAC
[ENA]
¡û
>W1710605212
FWWS01000013
Actinomycetota
Corynebacterium glucuronolyticum [FWWS]
66341
66413
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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