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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347865 (99 seq.)
>W1710860385
LMCV01000017
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
69282
69356
+
Lys
CTT
[ENA]
¡û
>W1710878474
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
2222910
2222836
-
Lys
CTT
[ENA]
¡û
>W1711055270
LRUN01000075
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
4695
4769
+
Arg
CCT
[ENA]
¡û
>W1711124706
LUKJ01000003
Gammaproteobacteria
Pseudomonas fluorescens [LUKJ]
5533012
5533086
+
Lys
CTT
[ENA]
¡û
>W1711138823
LVEJ01000013
Gammaproteobacteria
Pseudomonas fluorescens [LVEJ]
95410
95336
-
Lys
CTT
[ENA]
¡û
>W1711354501
MDFH01000016
Gammaproteobacteria
Pseudomonas simiae [MDFH]
272576
272502
-
Lys
CTT
[ENA]
¡û
>W1711688384
MSDF01000058
Gammaproteobacteria
Pseudomonas fluorescens [MSDF]
28037
27963
-
Lys
CTT
[ENA]
¡û
>W1712005307
NEHK01000015
Gammaproteobacteria
Pseudomonas sp. R41(2017) [NEHK]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005370
NEHM01000001
Gammaproteobacteria
Pseudomonas sp. R39(2017) [NEHM]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005490
NEHN01000015
Gammaproteobacteria
Pseudomonas sp. R38(2017) [NEHN]
70933
70859
-
Lys
CTT
[ENA]
¡û
>W1712005606
NEHP01000015
Gammaproteobacteria
Pseudomonas sp. R36(2017) [NEHP]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005800
NEHS01000016
Gammaproteobacteria
Pseudomonas sp. R33(2017) [NEHS]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712005922
NEHU01000015
Gammaproteobacteria
Pseudomonas sp. R31(2017) [NEHU]
86993
87067
+
Lys
CTT
[ENA]
¡û
>W1712007601
NEIW01000002
Gammaproteobacteria
Pseudomonas sp. B38(2017) [NEIW]
835361
835287
-
Arg
CCT
[ENA]
¡û
>W1712007652
NEIX01000001
Gammaproteobacteria
Pseudomonas sp. B37(2017) [NEIX]
1322038
1321964
-
Lys
CTT
[ENA]
¡û
>W1712007843
NEJA01000002
Gammaproteobacteria
Pseudomonas sp. B34(2017) [NEJA]
835361
835287
-
Arg
CCT
[ENA]
¡û
>W1712007915
NEJB01000006
Gammaproteobacteria
Pseudomonas sp. B33(2017) [NEJB]
343322
343248
-
Arg
CCT
[ENA]
¡û
>W1712007967
NEJC01000002
Gammaproteobacteria
Pseudomonas sp. B32(2017) [NEJC]
835361
835287
-
Arg
CCT
[ENA]
¡û
>W1712008018
NEJD01000001
Gammaproteobacteria
Pseudomonas sp. B31(2017) [NEJD]
925433
925359
-
Lys
CTT
[ENA]
¡û
>W1712008130
NEJE01000011
Gammaproteobacteria
Pseudomonas sp. B30(2017) [NEJE]
146334
146260
-
Arg
CCT
[ENA]
¡û
>W1712008217
NEJG01000006
Gammaproteobacteria
Pseudomonas sp. B29(2017) [NEJG]
343666
343592
-
Arg
CCT
[ENA]
¡û
>W1712008747
NEJO01000018
Gammaproteobacteria
Pseudomonas sp. B21(2017) [NEJO]
32058
32132
+
Arg
CCT
[ENA]
¡û
>W1712008800
NEJP01000014
Gammaproteobacteria
Pseudomonas sp. B20(2017) [NEJP]
95497
95571
+
Arg
CCT
[ENA]
¡û
>W1712008845
NEJQ01000006
Gammaproteobacteria
Pseudomonas sp. B1(2017) [NEJQ]
343322
343248
-
Arg
CCT
[ENA]
¡û
>W1712009054
NEJT01000014
Gammaproteobacteria
Pseudomonas sp. B17(2017) [NEJT]
95497
95571
+
Arg
CCT
[ENA]
¡û
>W1712009484
NEKA01000007
Gammaproteobacteria
Pseudomonas sp. B16(2017) [NEKA]
32058
32132
+
Arg
CCT
[ENA]
¡û
>W1712107062
NIXO01000002
Gammaproteobacteria
Pseudomonas sp. K2I15 [NIXO]
263044
262970
-
Lys
CTT
[ENA]
¡û
>WENV180315076
OBKH01011564
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
519
445
-
Lys
CTT
[ENA]
¢þ
>WENV180914429
ODSW01004305
[ODSW] human metagenome; G_DNA_Posterior fornix
167
93
-
Lys
CTT
[ENA]
¢þ
>WENV181370898
OFQU01000277
[OFQU] wastewater metagenome; Exp Tend CN 90WW
3012
3086
+
Lys
CTT
[ENA]
¢þ
>WENV181371047
OFQU01011951
[OFQU] wastewater metagenome; Exp Tend CN 90WW
88
162
+
Lys
CTT
[ENA]
¢þ
>WENV181371081
OFQU01019380
[OFQU] wastewater metagenome; Exp Tend CN 90WW
851
922
+
Lys
CTT
[ENA]
¢þ
>WENV181384979
OFRI01024202
[OFRI] wastewater metagenome; Exp Tend VB 90WW
549
623
+
Lys
CTT
[ENA]
¢þ
>WENV181399012
OFSE01006705
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1884
1958
+
Lys
CTT
[ENA]
¢þ
>W141188857
AYMZ01000006
Gammaproteobacteria
Pseudomonas moraviensis R28-S [AYMZ]
46211
46137
-
Lys
CTT
[ENA]
¡û
>WENV183725492
PJQF01000193
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
7784
7710
-
Lys
CTT
[ENA]
¢þ
>WENV170022584
BCQK01022818
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
686
760
+
Lys
CTT
[ENA]
¢þ
>WENV170706108
LNAP01001157
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
26482
26408
-
Lys
CTT
[ENA]
¢þ
>C181181664
CP029608
Gammaproteobacteria
Pseudomonas kribbensis 46-2 [CP029608]
2691892
2691966
+
Lys
CTT
-
¡û
>C181209262
LS483372
Gammaproteobacteria
Pseudomonas fluorescens NCTC10038 [LS483372]
2793540
2793614
+
Lys
CTT
-
¡û
>C191027416
CP024646
Gammaproteobacteria
Pseudomonas syringae [CP024646]
2760272
2760346
+
Lys
CTT
-
¡û
>C191051124
CP027218
Gammaproteobacteria
Pseudomonas sp. DTU12.3 [CP027218]
3770445
3770371
-
Lys
CTT
-
¡û
>W1910001683
ARVC01000011
Gammaproteobacteria
Pseudomonas sp. LAIL14HWK12:I2 [ARVC]
681798
681724
-
Arg
CCT
[ENA]
¡û
>W1910620332
LKBU01000001
Gammaproteobacteria
Pseudomonas sp. ICMP 564 [LKBU]
221131
221205
+
Leu
CAG
[ENA]
¡û
>W1910621028
LKCF01003268
Gammaproteobacteria
Pseudomonas sp. NZIPFR-PS2 [LKCF]
2022
1948
-
Lys
CTT
[ENA]
¡û
>W1910636790
LPNO01000035
Gammaproteobacteria
Pseudomonas sp. ATCC PTA-122608 [LPNO]
473294
473368
+
Lys
CTT
[ENA]
¡û
>W1910644675
LUUC01000001
Gammaproteobacteria
Pseudomonas asplenii 4A7 [LUUC]
251280
251206
-
Lys
CTT
[ENA]
¡û
>W1910767892
MOBQ01000003
Gammaproteobacteria
Pseudomonas frederiksbergensis 37A10 [MOBQ]
343633
343559
-
Lys
CTT
[ENA]
¡û
>W1910768009
MOBS01000004
Gammaproteobacteria
Pseudomonas fluorescens 36F3 [MOBS]
225701
225627
-
Lys
CTT
[ENA]
¡û
>W1910768562
MOCB01000009
Gammaproteobacteria
Pseudomonas fluorescens 89F1 [MOCB]
612526
612452
-
Lys
CTT
[ENA]
¡û
>W1910809697
MUHI01000016
Gammaproteobacteria
Pseudomonas fluorescens ATCC 13525 [MUHI]
9814
9740
-
Lys
CTT
[ENA]
¡û
>W1910990233
NKRF01000079
Gammaproteobacteria
Pseudomonas sp. GL93 [NKRF]
1610
1684
+
Lys
CTT
[ENA]
¡û
>W1911072024
NMRE01000086
Gammaproteobacteria
Pseudomonas sp. IB20 [NMRE]
5402
5476
+
Lys
CTT
[ENA]
¡û
>W1911072372
NMRO01000008
Gammaproteobacteria
Pseudomonas fluorescens EC1 [NMRO]
161329
161403
+
Leu
CAG
[ENA]
¡û
>W1911083848
NNBS01000008
Gammaproteobacteria
Pseudomonas fluorescens SC1 [NNBS]
161329
161403
+
Leu
CAG
[ENA]
¡û
>W1911568768
PCQL01000053
Gammaproteobacteria
Pseudomonas poae MYb117 [PCQL]
779
853
+
Lys
CTT
[ENA]
¡û
>W1911568879
PCQN01000029
Gammaproteobacteria
Pseudomonas poae MYb114 [PCQN]
34189
34115
-
Lys
CTT
[ENA]
¡û
>W1911671260
QFZZ01000001
Gammaproteobacteria
Pseudomonas sp. CFBP13508 [QFZZ]
659979
659905
-
Lys
CTT
[ENA]
¡û
>W1911671627
QGAF01000005
Gammaproteobacteria
Pseudomonas fluorescens CFBP13514 [QGAF]
44972
45046
+
Lys
CTT
[ENA]
¡û
>W1911748885
QWFC01000043
Gammaproteobacteria
Pseudomonas sp. 91RF [QWFC]
117216
117142
-
Lys
CTT
[ENA]
¡û
>W1810207752
POFN01000036
Gammaproteobacteria
Pseudomonas sp. FW215-L1 [POFN]
28541
28615
+
Lys
CTT
[ENA]
¡û
>W1810207820
POFO01000029
Gammaproteobacteria
Pseudomonas sp. FW215-R2 [POFO]
28592
28666
+
Lys
CTT
[ENA]
¡û
>W1810207931
POFQ01000031
Gammaproteobacteria
Pseudomonas sp. FW215-E1 [POFQ]
30177
30251
+
Lys
CTT
[ENA]
¡û
>W1810211064
POHU01000011
Gammaproteobacteria
Pseudomonas sp. FW305-BF6 [POHU]
102700
102774
+
Lys
CTT
[ENA]
¡û
>W1810211142
POHV01000012
Gammaproteobacteria
Pseudomonas sp. GW456-12-10-14-LB2 [POHV]
99119
99193
+
Lys
CTT
[ENA]
¡û
>W1810211195
POHW01000007
Gammaproteobacteria
Pseudomonas sp. FW305-BF15 [POHW]
106002
106076
+
Lys
CTT
[ENA]
¡û
>W1810238954
PPSA01000013
Gammaproteobacteria
Pseudomonas sp. GW456-12-1-14-TSB6 FW104-15G4B [PPSA]
68886
68812
-
Arg
CCT
[ENA]
¡û
>W1810243299
PPXZ02000006
Gammaproteobacteria
Pseudomonas sp. MWU12-2115 [PPXZ]
245538
245612
+
Lys
CTT
[ENA]
¡û
>W1810243548
PPYC02000013
Gammaproteobacteria
Pseudomonas sp. MWU13-2625 [PPYC]
243147
243221
+
Lys
CTT
[ENA]
¡û
>W1810392736
PYAQ01000005
Gammaproteobacteria
Pseudomonas sp. R9.37 [PYAQ]
18985
19059
+
Gln
CTG
[ENA]
¡û
>W1810580662
QETJ01000004
Gammaproteobacteria
Pseudomonas sp. NDM [QETJ]
83327
83401
+
Lys
CTT
[ENA]
¡û
>W1810670284
QJRR01000004
Gammaproteobacteria
Pseudomonas koreensis LB-090714 [QJRR]
330556
330630
+
Lys
CTT
[ENA]
¡û
>W1810784698
QRAV01000019
Gammaproteobacteria
Pseudomonas jessenii E2333 [QRAV]
2749
2675
-
Lys
CTT
[ENA]
¡û
>W1810884501
QUMR01000003
Gammaproteobacteria
Pseudomonas sp. OV221 [QUMR]
355629
355555
-
Lys
CTT
[ENA]
¡û
>W1810913379
QVNA01000055
Gammaproteobacteria
Pseudomonas fluorescens ATCC 13525 [QVNA]
8136
8210
+
Lys
CTT
[ENA]
¡û
>C151007919
CP005975
Gammaproteobacteria
Pseudomonas simiae PICF7 [CP005975]
4923772
4923698
-
Lys
CTT
[Ensembl]
¡û
>W1511359055
JRXW01000021
Gammaproteobacteria
Pseudomonas fluorescens AU11518 [JRXW]
672817
672743
-
Leu
CAG
[ENA]
¡û
>W1511359301
JRYA01000019
Gammaproteobacteria
Pseudomonas fluorescens AU14705 [JRYA]
80737
80663
-
Lys
CTT
[ENA]
¡û
>W1511366861
JSFK01000023
Gammaproteobacteria
Pseudomonas chlororaphis EA105 [JSFK]
70947
70873
-
Lys
CTT
[ENA]
¡û
>W1511400103
JTGH01000017
Gammaproteobacteria
Pseudomonas fluorescens SF4c [JTGH]
97705
97779
+
Arg
CCT
[ENA]
¡û
>W1511625702
LCZE01000022
Gammaproteobacteria
Pseudomonas fluorescens AU11114 [LCZE]
147185
147259
+
Lys
CTT
[ENA]
¡û
>C161036795
CP011566
Gammaproteobacteria
Pseudomonas sp. DR 5-09 [CP011566]
2767317
2767391
+
Arg
CCT
[Ensembl]
¡û
>C161036901
CP011567
Gammaproteobacteria
Pseudomonas sp. GR 6-02 [CP011567]
3284154
3284080
-
Lys
CTT
[Ensembl]
¡û
>C161068231
CP014205
Gammaproteobacteria
Pseudomonas glycinae MS586 [CP014205]
3481285
3481211
-
Arg
CCT
-
¡û
>W121044444
AHZM01000663
Gammaproteobacteria
Pseudomonas sp. R62 [AHZM]
121
47
-
Lys
CTT
[ENA]
¡û
>W1610086380
CVTK01000040
Gammaproteobacteria
Pseudomonas sp. 28 E 9 [CVTK]
273095
273169
+
Lys
CTT
[ENA]
¡û
>W1610086544
CVTN01000042
Gammaproteobacteria
Pseudomonas sp. 31 R 17 [CVTN]
58263
58189
-
Lys
CTT
[ENA]
¡û
>W1610087261
CVTX01000049
Gammaproteobacteria
Pseudomonas sp. 34 E 7 [CVTX]
9038
8964
-
Lys
CTT
[ENA]
¡û
>W1610620646
LHPA01000016
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
163718
163644
-
Lys
CTT
[ENA]
¡û
>W1610722731
LMCV01000017
Gammaproteobacteria
Pseudomonas sp. Root329 [LMCV]
69282
69356
+
Lys
CTT
[ENA]
¡û
>W1610740820
LMQZ01000001
Gammaproteobacteria
Pseudomonas sp. Leaf434 [LMQZ]
2222910
2222836
-
Lys
CTT
[ENA]
¡û
>W1610896316
LRUN01000075
Gammaproteobacteria
Pseudomonas bananamidigenes fluorescens [LRUN]
4695
4769
+
Arg
CCT
[ENA]
¡û
>W1610935678
LUKJ01000003
Gammaproteobacteria
Pseudomonas fluorescens [LUKJ]
5533012
5533086
+
Lys
CTT
[ENA]
¡û
>W1610949831
LVEJ01000013
Gammaproteobacteria
Pseudomonas fluorescens [LVEJ]
95410
95336
-
Lys
CTT
[ENA]
¡û
>W1710075847
BDAA01000023
Gammaproteobacteria
Pseudomonas fluorescens NBRC 14160 [BDAA]
44742
44816
+
Lys
CTT
[ENA]
¡û
>W1710556244
FOKB01000005
Gammaproteobacteria
Pseudomonas simiae [FOKB]
193112
193186
+
Lys
CTT
[ENA]
¡û
>W1710564778
FOQS01000005
Gammaproteobacteria
Pseudomonas sp. NFPP04 [FOQS]
422020
422094
+
Lys
CTT
[ENA]
¡û
>W1710565195
FORB01000004
Gammaproteobacteria
Pseudomonas sp. NFPP11 [FORB]
422048
422122
+
Lys
CTT
[ENA]
¡û
>W1710748340
LHPA01000016
Gammaproteobacteria
Pseudomonas sp. RIT-PI-o [LHPA]
163718
163644
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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