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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.348279 (45 seq.)
>W1710894170
LNFQ01000020
Bacteroidota
Bacteroidetes bacterium OLB11 [LNFQ]
18291
18365
+
Met
CAT
[ENA]
¡û
>W131170000
ARFF01000006
Bacteroidota
Niabella aurantiaca DSM 17617 [ARFF]
323468
323540
+
Met
CAT
[ENA]
¡û
>W1711501395
MKRO01000199
Bacteroidota
Sphingobacteriales bacterium 41-5 [MKRO]
4206
4278
+
Met
CAT
[ENA]
¡û
>WENV183727349
PJTO01032479
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
94
166
+
fMet
CAT
[ENA]
¢þ
>WENV183729115
PJTQ01005098
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
164
236
+
fMet
CAT
[ENA]
¢þ
>WENV183731428
PJTT01000001
[PJTT] soil metagenome; Soil (2) enriched on wood chips
132934
132862
-
fMet
CAT
[ENA]
¢þ
>WENV183740621
PJUF01004569
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1399
1471
+
fMet
CAT
[ENA]
¢þ
>WENV183740860
PJUF01013682
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1358
1284
-
fMet
CAT
[ENA]
¢þ
>WENV170012402
APMI01168627
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
126
198
+
Met
CAT
[ENA]
¢þ
>WENV170956305
MJUN01018706
[MJUN] soil metagenome; viral particles from soil sample TG1
184
258
+
Met
CAT
[ENA]
¢þ
>WENV170980732
MWVT01000033
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
12545
12619
+
Met
CAT
[ENA]
¢þ
>WENV170980792
MWVT01001275
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
1165
1239
+
Met
CAT
[ENA]
¢þ
>WENV170981016
MWVT01017228
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
354
428
+
Met
CAT
[ENA]
¢þ
>WENV170984790
MWVW01000056
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
2191
2265
+
Met
CAT
[ENA]
¢þ
>WENV170985072
MWVW01017727
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
724
798
+
Met
CAT
[ENA]
¢þ
>WENV170985078
MWVW01018809
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
398
326
-
Met
CAT
[ENA]
¢þ
>WENV170985139
MWVW01028608
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
52
126
+
Met
CAT
[ENA]
¢þ
>WENV170985539
MWVW01139839
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
156
230
+
Met
CAT
[ENA]
¢þ
>WENV170985711
MWVX01000853
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
4077
4003
-
Met
CAT
[ENA]
¢þ
>WENV170985745
MWVX01001577
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
983
1057
+
Met
CAT
[ENA]
¢þ
>WENV170986481
MWVX01043625
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
972
1046
+
Met
CAT
[ENA]
¢þ
>WENV170986560
MWVX01052074
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
240
166
-
Met
CAT
[ENA]
¢þ
>WENV170988284
MWVX01440554
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
214
288
+
Met
CAT
[ENA]
¢þ
>WENV170988839
MWVY01012987
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
368
294
-
Met
CAT
[ENA]
¢þ
>WENV170992350
MWWB01018913
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
500
426
-
Met
CAT
[ENA]
¢þ
>WENV170992613
MWWB01055040
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
177
103
-
Met
CAT
[ENA]
¢þ
>WENV170994254
MWWD01046902
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
238
312
+
Met
CAT
[ENA]
¢þ
>WENV170997467
MWWG01147146
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
414
340
-
Met
CAT
[ENA]
¢þ
>WENV170997515
MWWG01167584
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
204
130
-
Met
CAT
[ENA]
¢þ
>WENV170999229
MWWK01006586
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
202
276
+
Met
CAT
[ENA]
¢þ
>C191153660
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
2603121
2603193
+
Met
CAT
-
¡û
>C191153669
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
3433240
3433312
+
Met
CAT
-
¡û
>SRA1003389
SRR002326.431513
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
34
108
+
Met
CAT
[SRA]
>SRA1004143
SRR002328.168739
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
153
227
+
Met
CAT
[SRA]
>W1810692624
QLKR01000001
Bacteroidota
Niabella yanshanensis HAMBI_3031 [QLKR]
446459
446387
-
Met
CAT
[ENA]
¡û
>W1810745592
QOWJ01000001
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
1038018
1037946
-
Met
CAT
[ENA]
¡û
>W1810745600
QOWJ01000001
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
196795
196723
-
Met
CAT
[ENA]
¡û
>C151016363
CP007035
Bacteroidota
Niabella soli DSM 19437 JS13-8; DSM 19437 [CP007035]
395825
395899
+
Met
CAT
[Ensembl]
¡û
>C161034890
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
3446021
3445949
-
Met
CAT
[Ensembl]
¡û
>C161090529
CP015772
Bacteroidota
Niabella ginsenosidivorans BS26 [CP015772]
1353480
1353554
+
Met
CAT
[Ensembl]
¡û
>W121017739
AGSA01000024
Bacteroidota
Niabella soli DSM 19437 [AGSA]
53203
53129
-
Met
CAT
[ENA]
¡û
>W1610754436
LNFQ01000020
Bacteroidota
Bacteroidetes bacterium OLB11 [LNFQ]
18291
18365
+
Met
CAT
[ENA]
¡û
>W1710512662
FMZO01000002
Bacteroidota
Niabella drilacis [FMZO]
607635
607709
+
Met
CAT
[ENA]
¡û
>W1710583123
FQUO01000002
Bacteroidota
Cnuella takakiae [FQUO]
345924
345998
+
Met
CAT
[ENA]
¡û
>W1710583134
FQUO01000004
Bacteroidota
Cnuella takakiae [FQUO]
350657
350583
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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