This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349114 (66 seq.)
>W131000181
AEJB01000417
Actinomycetota
Streptomyces turgidiscabies Car8 [AEJB]
7005
6932
-
Asn
GTT
[ENA]
¡û
>W1710856239
LLZH01000001
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
160566
160493
-
Asn
GTT
[ENA]
¡û
>W1710859962
LMCM01000009
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
150078
150002
-
Asn
GTT
[ENA]
¡û
>W1710865227
LMGM01000002
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
168034
167958
-
Asn
GTT
[ENA]
¡û
>W1710866835
LMHU01000007
Actinomycetota
Terrabacter sp. Root181 [LMHU]
345235
345162
-
Asn
GTT
[ENA]
¡û
>W1710868159
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
580860
580933
+
Asn
GTT
[ENA]
¡û
>W1710879931
LMRZ01000004
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
731760
731833
+
Asn
GTT
[ENA]
¡û
>W1710879975
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
78373
78298
-
Asn
GTT
[ENA]
¡û
>W1710880995
LMSS01000006
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
240899
240824
-
Asn
GTT
[ENA]
¡û
>W1710881014
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
1890844
1890919
+
Asn
GTT
[ENA]
¡û
>W1711312302
MAST01000012
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
22083
22008
-
Asn
GTT
[ENA]
¡û
>W1711750978
MUNI01000100
Actinomycetota
Streptomyces reticuliscabiei [MUNI]
6089
6162
+
Asn
GTT
[ENA]
¡û
>W131185536
ARTT01000011
Actinomycetota
Terracoccus sp. 273MFTsu3.1 [ARTT]
8388
8315
-
Asn
GTT
[ENA]
¡û
>w012493
AAMN01000002
Actinomycetota
Janibacter sp. HTCC2649 [AAMN]
967365
967288
-
Asn
GTT
[ENA]
¡û
>W141214369
AZSS01000329
Actinomycetota
Streptomyces exfoliatus DSM 41693 [AZSS]
25224
25151
-
Asn
GTT
[ENA]
¡û
>WENV183092691
OLLI01001731
[OLLI] soil metagenome; soil
7832
7905
+
Asn
GTT
[ENA]
¢þ
>WENV183749766
PPFU01211020
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2961
2888
-
Asn
GTT
[ENA]
¢þ
>WENV170551912
CXWJ01029480
[CXWJ] wastewater metagenome; activated sludge
1592
1519
-
Asn
GTT
[ENA]
¢þ
>WENV170553814
CXWK01032067
[CXWK] wastewater metagenome; activated sludge
2121
2194
+
Asn
GTT
[ENA]
¢þ
>C181193614
CP030865
Actinomycetota
Micromonospora sp. B006 [CP030865]
4218302
4218229
-
Asn
GTT
-
¡û
>C181198586
CP031263
Actinomycetota
Micromonospora aurantiaca [CP031263]
30358
30285
-
Asn
GTT
-
¡û
>C191093802
CP032698
Actinomycetota
Streptomyces hundungensis BH38 [CP032698]
5918863
5918936
+
Asn
GTT
-
¡û
>C191147703
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
1035213
1035286
+
Asn
GTT
-
¡û
>W141761141
JOAN01000009
Actinomycetota
Micromonospora chokoriensis [JOAN]
43994
44067
+
Asn
GTT
[ENA]
¡û
>W141773515
JOIN01000001
Actinomycetota
Corynebacterium variabile [JOIN]
551796
551723
-
Asn
GTT
[ENA]
¡û
>W1910377638
FUKO01000013
Actinomycetota
Microbacterium esteraromaticum B Mb 05.01 [FUKO]
20081
20154
+
Asn
GTT
[ENA]
¡û
>W1910613617
LGUI01000001
Actinomycetota
Streptomyces eurocidicus ATCC 27428 [LGUI]
534193
534120
-
Asn
GTT
[ENA]
¡û
>W1910655984
MAGP01000143
Actinomycetota
Micromonospora chalcea DSM 43026 [MAGP]
120840
120913
+
Asn
GTT
[ENA]
¡û
>W1910655986
MAGP01000143
Actinomycetota
Micromonospora chalcea DSM 43026 [MAGP]
22927
22854
-
Asn
GTT
[ENA]
¡û
>W1911083407
NNBJ01000016
Actinomycetota
Streptomyces sp. CB01201 [NNBJ]
176426
176499
+
Asn
GTT
[ENA]
¡û
>W1911533132
OKQN01000010
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
292891
292964
+
Asn
GTT
[ENA]
¡û
>W1911653629
QDGB01000214
Actinomycetota
Micromonospora ureilytica LB19 [QDGB]
14541
14614
+
Asn
GTT
[ENA]
¡û
>W1911676182
QGSX01000308
Actinomycetota
Micromonospora chalcea LB4 [QGSX]
2466
2393
-
Asn
GTT
[ENA]
¡û
>W1911676256
QGSY01000234
Actinomycetota
Micromonospora arida LB32 [QGSY]
51755
51682
-
Asn
GTT
[ENA]
¡û
>W1911798432
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
3357967
3357892
-
Asn
GTT
[ENA]
¡û
>W1810364539
PVTI01000001
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
153637
153710
+
Asn
GTT
[ENA]
¡û
>W1810722180
QNTW01000484
Actinomycetota
Micromonospora provocatoris MT25 [QNTW]
2365
2292
-
Asn
GTT
[ENA]
¡û
>W1810888705
QURC01000002
Actinomycetota
Streptomyces sp. AcE210 [QURC]
52615
52688
+
Asn
GTT
[ENA]
¡û
>W1510010662
BBLY01000001
Actinomycetota
Demequina pelophila NBRC 109393 [BBLY]
900890
900965
+
Asn
GTT
[ENA]
¡û
>C10109191
CP002162
Actinomycetota
Micromonospora aurantiaca ATCC 27029 [CP002162]
5383680
5383607
-
Asn
GTT
[Ensembl]
¡û
>W1511534751
JYOE01000035
Actinomycetota
Terrabacter sp. 28 [JYOE]
3128
3055
-
Asn
GTT
[ENA]
¡û
>W1511656707
LEKG01000044
Actinomycetota
Micromonospora sp. RV43 [LEKG]
18187
18114
-
Asn
GTT
[ENA]
¡û
>W11155909
AFAQ01000281
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
478
553
+
Asn
GTT
[ENA]
¡û
>W1511696056
LGDD01000291
Actinomycetota
Streptomyces sp. WM6378 [LGDD]
67766
67839
+
Asn
GTT
[ENA]
¡û
>W1610027150
AVPK01000001
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
83559
83486
-
Asn
GTT
[ENA]
¡û
>W1610052402
BBHW01000319
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
1739
1812
+
Asn
GTT
[ENA]
¡û
>W1610052449
BBHX01000165
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
1743
1818
+
Asn
GTT
[ENA]
¡û
>W1610052594
BBIA01001131
Actinomycetota
Catenuloplanes atrovinosus JCM 9535 [BBIA]
372
297
-
Asn
GTT
[ENA]
¡û
>W1610061311
BCMN01000001
Actinomycetota
Streptomyces turgidiscabies [BCMN]
443173
443100
-
Asn
GTT
[ENA]
¡û
>W1610718620
LLZH01000001
Actinomycetota
Actinoplanes awajinensis subsp. mycoplanecinus [LLZH]
160566
160493
-
Asn
GTT
[ENA]
¡û
>W1610722308
LMCM01000009
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
150078
150002
-
Asn
GTT
[ENA]
¡û
>W1610727573
LMGM01000002
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
168034
167958
-
Asn
GTT
[ENA]
¡û
>W1610729181
LMHU01000007
Actinomycetota
Terrabacter sp. Root181 [LMHU]
345235
345162
-
Asn
GTT
[ENA]
¡û
>W1610730505
LMIW01000008
Actinomycetota
Terrabacter sp. Root85 [LMIW]
580860
580933
+
Asn
GTT
[ENA]
¡û
>W1610742277
LMRZ01000004
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
731760
731833
+
Asn
GTT
[ENA]
¡û
>W1610742321
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
78373
78298
-
Asn
GTT
[ENA]
¡û
>W1610743341
LMSS01000006
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
240899
240824
-
Asn
GTT
[ENA]
¡û
>W1610743360
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
1890844
1890919
+
Asn
GTT
[ENA]
¡û
>W1710023315
AVPK01000001
Actinomycetota
Knoellia subterranea KCTC 19937 [AVPK]
83559
83486
-
Asn
GTT
[ENA]
¡û
>W1710048780
BBHW01000319
Actinomycetota
Catenuloplanes japonicus JCM 9106 [BBHW]
1739
1812
+
Asn
GTT
[ENA]
¡û
>W1710048827
BBHX01000165
Actinomycetota
Catenuloplanes crispus JCM 9312 [BBHX]
1743
1818
+
Asn
GTT
[ENA]
¡û
>W1710048972
BBIA01001131
Actinomycetota
Catenuloplanes atrovinosus JCM 9535 [BBIA]
372
297
-
Asn
GTT
[ENA]
¡û
>W1710058976
BCMN01000001
Actinomycetota
Streptomyces turgidiscabies [BCMN]
443173
443100
-
Asn
GTT
[ENA]
¡û
>W1710502795
FMCR01000010
Actinomycetota
Micromonospora saelicesensis [FMCR]
45572
45645
+
Asn
GTT
[ENA]
¡û
>W1710504282
FMHW01000002
Actinomycetota
Micromonospora pallida [FMHW]
7605347
7605420
+
Asn
GTT
[ENA]
¡û
>W1710773190
LIVU01000011
Actinomycetota
Micromonospora sp. TSRI0369 [LIVU]
56002
56075
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK