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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349351 (21 seq.)
>W131224559
AUCX01000005
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
161535
161461
-
Gln
CTG
[ENA]
¡û
>W131224561
AUCX01000005
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
157116
157042
-
Gln
CTG
[ENA]
¡û
>W131224796
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
202878
202804
-
Gln
CTG
[ENA]
¡û
>W131224799
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
202237
202163
-
Gln
CTG
[ENA]
¡û
>W131224858
AUDC01000011
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
270641
270715
+
Gln
CTG
[ENA]
¡û
>W131224863
AUDC01000011
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
287900
287974
+
Gln
CTG
[ENA]
¡û
>WENV180043351
LQAH01034481
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
144
218
+
Gln
CTG
[ENA]
¢þ
>WENV180317258
OBKJ01085918
[OBKJ] metagenome; hydrothermal vent
145
71
-
Gln
CTG
[ENA]
¢þ
>WENV183747340
PPCM01001008
[PPCM] marine sediment metagenome; marine sediment
15372
15445
+
Gln
CTG
[ENA]
¢þ
>WENV183747664
PPCM01015173
[PPCM] marine sediment metagenome; marine sediment
367
293
-
Gln
CTG
[ENA]
¢þ
>WENV170635439
JDSF01022146
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
164
238
+
Gln
CTG
[ENA]
¢þ
>WENV170645362
JMSV01000860
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
76
150
+
Gln
CTG
[ENA]
¢þ
>WENV170645412
JMSV01003569
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
477
403
-
Gln
CTG
[ENA]
¢þ
>W09118033
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
51401
51475
+
Gln
CTG
[ENA]
¡û
>W09118036
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
52899
52973
+
Gln
CTG
[ENA]
¡û
>C09104219
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3428907
3428981
+
Gln
CTG
[Ensembl]
¡û
>C09104222
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3430406
3430480
+
Gln
CTG
[Ensembl]
¡û
>C141011948
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1896516
1896442
-
Gln
CTG
-
¡û
>C141011951
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1895875
1895801
-
Gln
CTG
-
¡û
>C131018130
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1896516
1896442
-
Gln
CTG
[Ensembl]
¡û
>C131018133
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1895875
1895801
-
Gln
CTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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