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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349357 (49 seq.)
>W131110230
APJM01000011
Actinomycetota
Leucobacter sp. UCD-THU [APJM]
401373
401445
+
Thr
GGT
[ENA]
¡û
>W131179558
ARMM01000008
Actinomycetota
Gulosibacter faecalis ATCC 13722 [ARMM]
139906
139832
-
Thr
GGT
[ENA]
¡û
>W131191136
ASHR01000012
Actinomycetota
Agrococcus pavilionensis RW1 [ASHR]
11315
11387
+
Thr
GGT
[ENA]
¡û
>W131218525
ATXU01000009
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
33322
33394
+
Thr
GGT
[ENA]
¡û
>W131231014
AUIC01000005
Actinomycetota
Pseudoclavibacter soli DSM 23366 [AUIC]
70875
70947
+
Thr
GGT
[ENA]
¡û
>W131234880
AULD01000005
Actinomycetota
Agrococcus lahaulensis DSM 17612 [AULD]
83658
83586
-
Thr
GGT
[ENA]
¡û
>C171036899
CP015208
Actinomycetota
Candidatus Rhodoluna planktonica MWH-Dar1 [CP015208]
180730
180802
+
Thr
GGT
-
¡û
>WENV180101089
OAOU01000375
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
1504
1432
-
Thr
GGT
[ENA]
¢þ
>WENV019004
AACY020523958
Marine microbial communities from Global Ocean Sampling (GOS)
228
152
-
Thr
GGT
[ENA]
>WENV019123
AACY020526272
Marine microbial communities from Global Ocean Sampling (GOS)
9622
9546
-
Thr
GGT
[ENA]
>WENV183729291
PJTQ01018612
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
318
390
+
Thr
GGT
[ENA]
¢þ
>WENV170118784
CENJ01089247
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
254
182
-
Thr
GGT
[ENA]
¢þ
>WENV170135693
CENU01289628
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
194
122
-
Thr
GGT
[ENA]
¢þ
>WENV170606218
FUWD010632945
[FUWD] metagenome; unknown
71
143
+
Thr
GGT
[ENA]
¢þ
>WENV170621906
FUWD013078756
[FUWD] metagenome; unknown
218
144
-
Thr
GGT
[ENA]
¢þ
>WENV170630102
FUWD013294124
[FUWD] metagenome; unknown
218
144
-
Thr
GGT
[ENA]
¢þ
>WENV170645624
JNSL01000079
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
16189
16261
+
Thr
GGT
[ENA]
¢þ
>WENV170863679
MDTB01094514
[MDTB] marine metagenome; seawater
4394
4322
-
Thr
GGT
[ENA]
¢þ
>C181002048
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
1588579
1588651
+
Thr
GGT
-
¡û
>C181092820
CP023994
Actinomycetota
Aurantimicrobium photophilum MWH-Mo1 [CP023994]
1545856
1545784
-
Thr
GGT
-
¡û
>C181194467
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
1450669
1450597
-
Thr
GGT
-
¡û
>C191056062
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
606979
607051
+
Thr
GGT
-
¡û
>C191134146
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
226079
226151
+
Thr
GGT
-
¡û
>C191146778
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
2353240
2353168
-
Thr
GGT
-
¡û
>C191178375
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1190869
1190797
-
Thr
GGT
-
¡û
>C191178413
CP040510
Actinomycetota
Rhodoluna limnophila 36A-HELLB [CP040510]
1160277
1160205
-
Thr
GGT
-
¡û
>W141766596
JOEB01000005
Actinomycetota
Mycetocola saprophilus [JOEB]
170195
170267
+
Thr
GGT
[ENA]
¡û
>W141766651
JOEC01000004
Actinomycetota
Mycetocola saprophilus [JOEC]
170209
170281
+
Thr
GGT
[ENA]
¡û
>W1910231931
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
415641
415569
-
Thr
GGT
[ENA]
¡û
>W1910374233
FUIC01000011
Actinomycetota
Gulosibacter sp. 10 [FUIC]
178392
178464
+
Thr
GGT
[ENA]
¡û
>W1910792224
MRAQ01000067
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
135348
135276
-
Thr
GGT
[ENA]
¡û
>W1910792260
MRAR01000003
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
13994
14066
+
Thr
GGT
[ENA]
¡û
>W1910792369
MRAT01000016
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
155221
155149
-
Thr
GGT
[ENA]
¡û
>W1910792394
MRAU01000005
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
1787
1715
-
Thr
GGT
[ENA]
¡û
>W1910792452
MRAV01000011
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
351047
351119
+
Thr
GGT
[ENA]
¡û
>W1910792509
MRAW01000052
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
17704
17632
-
Thr
GGT
[ENA]
¡û
>W1910804064
MTCJ01000065
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
13804
13876
+
Thr
GGT
[ENA]
¡û
>WENV027236
AACY021030429
Marine microbial communities from Global Ocean Sampling (GOS)
299
223
-
Thr
GGT
[ENA]
>W1810387067
PXVE01000020
Actinomycetota
Gulosibacter molinativorax ON4 [PXVE]
82
156
+
Thr
GGT
[ENA]
¡û
>W1810917667
QWBV01000020
Actinomycetota
Leucobacter sp. wl10 [QWBV]
70311
70239
-
Thr
GGT
[ENA]
¡û
>WENV044235
AACY022402467
Marine microbial communities from Global Ocean Sampling (GOS)
818
744
-
Thr
GGT
[ENA]
>W1511585436
LAYO01000093
Actinomycetota
Leucobacter sp. Ag1 [LAYO]
60685
60613
-
Thr
GGT
[ENA]
¡û
>W1610069594
BCSP01000008
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
24560
24486
-
Thr
GGT
[ENA]
¡û
>WENV071270
AACY023841065
Marine microbial communities from Global Ocean Sampling (GOS)
524
600
+
Thr
GGT
[ENA]
>W1610590391
LDRK01000054
Actinomycetota
Leucobacter chromiiresistens [LDRK]
23082
23154
+
Thr
GGT
[ENA]
¡û
>W1710066967
BCSP01000008
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
24560
24486
-
Thr
GGT
[ENA]
¡û
>W1710526114
FNKB01000001
Actinomycetota
Leucobacter chromiiresistens [FNKB]
1140581
1140653
+
Thr
GGT
[ENA]
¡û
>W1710575840
FOZN01000002
Actinomycetota
Agrococcus baldri [FOZN]
110097
110025
-
Thr
GGT
[ENA]
¡û
>W1710709671
LDRK01000054
Actinomycetota
Leucobacter chromiiresistens [LDRK]
23082
23154
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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