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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349605 (51 seq.)
>W131065837
ANNX01000076
Cyanobacteriota
Scytonema hofmannii PCC 7110 [ANNX]
2532
2605
+
Asn
GTT
[ENA]
¡û
>W1711190058
LWRO01000057
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
2149
2222
+
Asn
GTT
[ENA]
¡û
>W1711460807
MJGC01000128
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
2394
2469
+
Asn
GTT
[ENA]
¡û
>W1711460808
MJGC01000128
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
2504
2577
+
Asn
GTT
[ENA]
¡û
>W1711510368
MLAW01000008
Cyanobacteriota
Roseofilum reptotaenium AO1-A [MLAW]
3804
3875
+
Asn
GTT
[ENA]
¡û
>C171072573
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
848527
848598
+
Asn
GTT
-
¡û
>W131166611
ARCP01000008
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
46820
46891
+
Asn
GTT
[ENA]
¡û
>w013569
AANO01000004
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
49597
49673
+
Asn
GTT
[ENA]
¡û
>W08010758
ABRS01000001
Cyanobacteriota
Coleofasciculus chthonoplastes PCC 7420 [ABRS]
65086
65157
+
Asn
GTT
[ENA]
¡û
>W08011551
ABVJ01000018
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
49935
50008
+
Asn
GTT
[ENA]
¡û
>WENV181384855
OFRI01016393
[OFRI] wastewater metagenome; Exp Tend VB 90WW
672
599
-
Asn
GTT
[ENA]
¢þ
>WENV181414197
OGCL01000100
[OGCL] hot springs metagenome; Hot spring water
31050
31123
+
Asn
GTT
[ENA]
¢þ
>WENV181416801
OGCL01154229
[OGCL] hot springs metagenome; Hot spring water
495
424
-
Asn
GTT
[ENA]
¢þ
>WENV170391164
CEUA01207510
[CEUA] marine metagenome genome assembly TARA_132_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
322
395
+
Asn
GTT
[ENA]
¢þ
>WENV170615348
FUWD012855393
[FUWD] metagenome; unknown
5065
4994
-
Asn
GTT
[ENA]
¢þ
>C181004962
AP018255
Cyanobacteriota
Calothrix sp. NIES-4071 [AP018255]
2315114
2315041
-
Asn
GTT
-
¡û
>C181005002
AP018280
Cyanobacteriota
Calothrix sp. NIES-4101 [AP018280]
1429606
1429533
-
Asn
GTT
-
¡û
>C181030487
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1065471
1065398
-
Asn
GTT
-
¡û
>W141701069
JMKF01000004
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
74044
73971
-
Asn
GTT
[ENA]
¡û
>C09103592
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
3574345
3574272
-
Asn
GTT
[Ensembl]
¡û
>W1910976645
NKFP01000004
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
929693
929766
+
Asn
GTT
[ENA]
¡û
>W1911176964
NQKY01000022
Cyanobacteriota
Synechococcus sp. BO 8801 [NQKY]
1276
1349
+
Asn
GTT
[ENA]
¡û
>W1911278509
NTFS01000021
Cyanobacteriota
Calothrix elsteri CCALA 953 [NTFS]
20080
20153
+
Asn
GTT
[ENA]
¡û
>W1911638476
PVWP01000001
Cyanobacteriota
Aphanothece minutissima minutissima CCALA 015 [PVWP]
1256
1329
+
Asn
GTT
[ENA]
¡û
>W1810366179
PVWD01000008
Cyanobacteriota
filamentous cyanobacterium CCP2 [PVWD]
1404
1475
+
Asn
GTT
[ENA]
¡û
>W1810366239
PVWE01001150
Cyanobacteriota
filamentous cyanobacterium CCP1 [PVWE]
584
513
-
Asn
GTT
[ENA]
¡û
>W1810387041
PXVC01000178
Cyanobacteriota
Synechococcus lacustris Tous [PXVC]
155
82
-
Asn
GTT
[ENA]
¡û
>W1810521166
QCHN01000001
Cyanobacteriota
Prochlorococcus sp. AG-402-C09 [QCHN]
98091
98162
+
Asn
GTT
[ENA]
¡û
>W1810526284
QCPC01000017
Cyanobacteriota
Prochlorococcus sp. AG-436-C13 [QCPC]
31260
31333
+
Asn
GTT
[ENA]
¡û
>SRA1028065
SRR035086.249299
454 Sequencing (SRP001807)
293
222
-
Asn
GTT
[SRA]
>SRA1031649
SRR035087.464413
454 Sequencing (SRP001808)
193
122
-
Asn
GTT
[SRA]
>SRA1051947
SRR035098.111825
454 Sequencing (SRP001819)
174
245
+
Asn
GTT
[SRA]
>SRA1052036
SRR035098.127718
454 Sequencing (SRP001819)
92
163
+
Asn
GTT
[SRA]
>SRA1052407
SRR035098.197387
454 Sequencing (SRP001819)
215
286
+
Asn
GTT
[SRA]
>SRA1052667
SRR035098.249151
454 Sequencing (SRP001819)
220
291
+
Asn
GTT
[SRA]
>SRA1052804
SRR035098.278745
454 Sequencing (SRP001819)
183
254
+
Asn
GTT
[SRA]
>SRA1053012
SRR035098.317925
454 Sequencing (SRP001819)
124
195
+
Asn
GTT
[SRA]
>SRA1053153
SRR035098.349098
454 Sequencing (SRP001819)
106
177
+
Asn
GTT
[SRA]
>SRA1053313
SRR035098.380189
454 Sequencing (SRP001819)
324
395
+
Asn
GTT
[SRA]
>SRA1053319
SRR035098.381998
454 Sequencing (SRP001819)
215
286
+
Asn
GTT
[SRA]
>SRA1053493
SRR035098.417677
454 Sequencing (SRP001819)
215
286
+
Asn
GTT
[SRA]
>SRA1053497
SRR035098.419449
454 Sequencing (SRP001819)
413
342
-
Asn
GTT
[SRA]
>W1511013875
JHEG02000058
Cyanobacteriota
Tolypothrix bouteillei VB521301 [JHEG]
169707
169780
+
Asn
GTT
[ENA]
¡û
>W1511501652
JXCA01000005
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
230773
230700
-
Asn
GTT
[ENA]
¡û
>C161002796
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
3285643
3285570
-
Asn
GTT
[Ensembl]
¡û
>C131003918
CP003495
Cyanobacteriota
Cyanobium gracile PCC 6307 [CP003495]
2852423
2852350
-
Asn
GTT
[Ensembl]
¡û
>C131004727
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
1804213
1804140
-
Asn
GTT
[Ensembl]
¡û
>C131004882
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
7374391
7374462
+
Asn
GTT
[Ensembl]
¡û
>C131004301
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
287381
287452
+
Asn
GTT
[Ensembl]
¡û
>C131004229
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
7119121
7119050
-
Asn
GTT
[Ensembl]
¡û
>W1610992177
LWRO01000057
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
2149
2222
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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