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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349663 (13 seq.)
>C024131
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2247566
2247492
-
Thr
GGT
[Ensembl]
¡û
>WENV170008723
APHM01002777
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
32
106
+
Thr
GGT
[ENA]
¢þ
>C181192120
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2257594
2257521
-
Thr
GGT
-
¡û
>C191072384
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
2267886
2267813
-
Thr
GGT
-
¡û
>C191072428
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2253201
2253128
-
Thr
GGT
-
¡û
>C191072474
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2362115
2362042
-
Thr
GGT
-
¡û
>C191072518
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2238206
2238133
-
Thr
GGT
-
¡û
>C191072563
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2305018
2304945
-
Thr
GGT
-
¡û
>W1910870054
NCQX01000048
Rhodothermota
Salinibacter ruber SP273 [NCQX]
17790
17717
-
Thr
GGT
[ENA]
¡û
>W1910870079
NCQY01000004
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
89868
89795
-
Thr
GGT
[ENA]
¡û
>W1910870124
NCQZ01000016
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
108001
107928
-
Thr
GGT
[ENA]
¡û
>W1910870180
NCRA01000006
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
65687
65614
-
Thr
GGT
[ENA]
¡û
>C131018250
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2324953
2324879
-
Thr
GGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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