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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349664 (13 seq.)
>C024132
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2247376
2247305
-
Met
CAT
[Ensembl]
¡û
>WENV170008724
APHM01002777
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
222
294
+
Met
CAT
[ENA]
¢þ
>C181192121
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2257404
2257332
-
Met
CAT
-
¡û
>C191072385
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
2267696
2267624
-
Met
CAT
-
¡û
>C191072429
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2253011
2252939
-
Met
CAT
-
¡û
>C191072475
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2361925
2361853
-
Met
CAT
-
¡û
>C191072519
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2238016
2237944
-
Met
CAT
-
¡û
>C191072564
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2304828
2304756
-
Met
CAT
-
¡û
>W1910870055
NCQX01000048
Rhodothermota
Salinibacter ruber SP273 [NCQX]
17600
17528
-
Met
CAT
[ENA]
¡û
>W1910870080
NCQY01000004
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
89677
89605
-
Met
CAT
[ENA]
¡û
>W1910870125
NCQZ01000016
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
107810
107738
-
Met
CAT
[ENA]
¡û
>W1910870181
NCRA01000006
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
65496
65424
-
Met
CAT
[ENA]
¡û
>C131018251
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2324763
2324691
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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