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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349704 (49 seq.)
>W131229158
AUGO01000007
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
30459
30385
-
Pseudo
TGG
[ENA]
¡û
>WENV181205751
OFAP01000880
[OFAP] metagenome; hydrothermal vent
686
614
-
Pro
TGG
[ENA]
¢þ
>WENV181206061
OFAS01001956
[OFAS] metagenome; hydrothermal vent
805
877
+
Pro
TGG
[ENA]
¢þ
>WENV181206926
OFAX01003092
[OFAX] metagenome; hydrothermal vent
626
698
+
Pro
TGG
[ENA]
¢þ
>C181056670
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
4918991
4919063
+
Pro
TGG
-
¡û
>C181092420
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
147358
147430
+
Pro
TGG
-
¡û
>C191111345
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
248001
247929
-
Pro
TGG
-
¡û
>C191112424
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
337680
337752
+
Pro
TGG
-
¡û
>C191112928
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3773683
3773611
-
Pro
TGG
-
¡û
>C191115333
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
2380365
2380437
+
Pro
TGG
-
¡û
>C191115691
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1599857
1599785
-
Pro
TGG
-
¡û
>C191115733
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3991468
3991540
+
Pro
TGG
-
¡û
>C191115818
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
2330849
2330921
+
Pro
TGG
-
¡û
>C191115888
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
215971
216043
+
Pro
TGG
-
¡û
>C191115992
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
4051764
4051836
+
Pro
TGG
-
¡û
>C191116106
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
1883602
1883530
-
Pro
TGG
-
¡û
>C191116125
CP033929
Bacteroidota
Chryseobacterium indoltheticum ATCC 27950 [CP033929]
1135483
1135555
+
Pro
TGG
-
¡û
>C191116211
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4296792
4296864
+
Pro
TGG
-
¡û
>C191116298
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4047233
4047305
+
Pro
TGG
-
¡û
>C191116376
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2066469
2066541
+
Pro
TGG
-
¡û
>C191204262
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4388178
4388252
+
Pro
TGG
-
¡û
>C191209958
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1078166
1078238
+
Pro
TGG
-
¡û
>C191218930
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4037710
4037782
+
Pro
TGG
-
¡û
>W1910184829
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
209695
209621
-
Pro
TGG
[ENA]
¡û
>W1910341159
FTPE01000008
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
150372
150444
+
Pro
TGG
[ENA]
¡û
>W1910808728
MUGP01000002
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
50261
50333
+
Pro
TGG
[ENA]
¡û
>W1911218410
NRQS01000007
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
152531
152603
+
Pro
TGG
[ENA]
¡û
>W1911218496
NRQT01000014
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
543
615
+
Pro
TGG
[ENA]
¡û
>W1911566407
PCOU01000029
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
57468
57540
+
Pro
TGG
[ENA]
¡û
>W1911567077
PCPH01000007
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
87372
87300
-
Pro
TGG
[ENA]
¡û
>W1911567436
PCPP01000001
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
133209
133281
+
Pro
TGG
[ENA]
¡û
>W1911647531
QAJO01000002
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
280082
280010
-
Pro
TGG
[ENA]
¡û
>W1911680444
QICI01000103
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
9903
9975
+
Pro
TGG
[ENA]
¡û
>W1911680512
QICX01000016
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
18041
18113
+
Pro
TGG
[ENA]
¡û
>W1911701202
QNUE01000006
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
81425
81497
+
Pro
TGG
[ENA]
¡û
>W1911701252
QNUF01000008
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
17384
17312
-
Pro
TGG
[ENA]
¡û
>W1911701386
QNUH01000013
Bacteroidota
Chryseobacterium elymi KCTC 22547 [QNUH]
81291
81363
+
Pro
TGG
[ENA]
¡û
>W1911701807
QNVT01000017
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
87158
87086
-
Pro
TGG
[ENA]
¡û
>W1810090048
PGFD01000004
Bacteroidota
Chryseobacterium geocarposphaerae DSM 27617 [PGFD]
150801
150875
+
Pro
TGG
[ENA]
¡û
>W1810193874
PKNN01000008
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
25105
25177
+
Pro
TGG
[ENA]
¡û
>W1810234232
PPEG02000006
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
273106
273034
-
Pro
TGG
[ENA]
¡û
>W1810234290
PPEH01000003
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
348001
347929
-
Pro
TGG
[ENA]
¡û
>W1810234401
PPEI02000005
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
270299
270227
-
Pro
TGG
[ENA]
¡û
>W1810385688
PXUE01000004
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
265036
264964
-
Pro
TGG
[ENA]
¡û
>W1810475451
QAJA01000773
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
810
882
+
Pro
TGG
[ENA]
¡û
>W1810538600
QDFZ01000009
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
31600
31528
-
Pro
TGG
[ENA]
¡û
>W1810609217
QGTV01000007
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
117011
116939
-
Pro
TGG
[ENA]
¡û
>W1810707216
QNFY01000012
Bacteroidota
Chryseobacterium lathyri KCTC 22544 [QNFY]
37102
37174
+
Pro
TGG
[ENA]
¡û
>W1810860733
QTTJ01000001
Bacteroidota
Chryseobacterium sp. 1335 [QTTJ]
2756548
2756476
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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