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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349706 (71 seq.)
>W1711132220
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
297689
297617
-
Glu
TTC
[ENA]
¡û
>W1711318326
MAYF01000311
Bacteroidota
Chryseobacterium contaminans [MAYF]
17842
17770
-
Glu
TTC
[ENA]
¡û
>W1711318414
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
129146
129218
+
Glu
TTC
[ENA]
¡û
>W1711318491
MAYH01000050
Bacteroidota
Chryseobacterium artocarpi [MAYH]
103362
103290
-
Glu
TTC
[ENA]
¡û
>C171083734
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
738582
738654
+
Glu
TTC
-
¡û
>WENV181205669
OFAO01002194
[OFAO] metagenome; hydrothermal vent
399
327
-
Glu
TTC
[ENA]
¢þ
>WENV181205803
OFAP01006358
[OFAP] metagenome; hydrothermal vent
228
300
+
Glu
TTC
[ENA]
¢þ
>WENV181205900
OFAQ01006876
[OFAQ] metagenome; hydrothermal vent
399
327
-
Glu
TTC
[ENA]
¢þ
>WENV181205964
OFAR01001202
[OFAR] metagenome; hydrothermal vent
802
874
+
Glu
TTC
[ENA]
¢þ
>WENV181206102
OFAS01007943
[OFAS] metagenome; hydrothermal vent
156
228
+
Glu
TTC
[ENA]
¢þ
>WENV181206956
OFAX01006306
[OFAX] metagenome; hydrothermal vent
399
327
-
Glu
TTC
[ENA]
¢þ
>W141168450
AXUZ01000016
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
123977
124049
+
Glu
TTC
[ENA]
¡û
>C181056674
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
4920003
4920075
+
Glu
TTC
-
¡û
>C181092424
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
148368
148440
+
Glu
TTC
-
¡û
>C191111349
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
246991
246919
-
Glu
TTC
-
¡û
>C191112428
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
338656
338728
+
Glu
TTC
-
¡û
>C191112932
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3772671
3772599
-
Glu
TTC
-
¡û
>C191115695
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1598610
1598538
-
Glu
TTC
-
¡û
>C191115737
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3992722
3992794
+
Glu
TTC
-
¡û
>C191115822
CP033924
Bacteroidota
Chryseobacterium lactis KC_1864 [CP033924]
2331870
2331942
+
Glu
TTC
-
¡û
>C191115892
CP033925
Bacteroidota
Chryseobacterium lactis G0197 [CP033925]
216992
217064
+
Glu
TTC
-
¡û
>C191115994
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
4052529
4052601
+
Glu
TTC
-
¡û
>C191116215
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4297855
4297927
+
Glu
TTC
-
¡û
>C191204267
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4389156
4389228
+
Glu
TTC
-
¡û
>C191209962
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1079420
1079492
+
Glu
TTC
-
¡û
>C191218934
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4038722
4038794
+
Glu
TTC
-
¡û
>W09126996
ACKQ01000055
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
20830
20758
-
Glu
TTC
[ENA]
¡û
>W141809189
JPRH01000005
Bacteroidota
Chryseobacterium soli [JPRH]
102369
102295
-
Glu
TTC
[ENA]
¡û
>W141815903
JQJM01000007
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
134300
134372
+
Glu
TTC
[ENA]
¡û
>W1910184834
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
208716
208644
-
Glu
TTC
[ENA]
¡û
>W1910341164
FTPE01000008
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
151275
151347
+
Glu
TTC
[ENA]
¡û
>W1911218414
NRQS01000007
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
153777
153849
+
Glu
TTC
[ENA]
¡û
>W1911218500
NRQT01000014
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
1789
1861
+
Glu
TTC
[ENA]
¡û
>W1911566412
PCOU01000029
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
58433
58505
+
Glu
TTC
[ENA]
¡û
>W1911567082
PCPH01000007
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
86410
86338
-
Glu
TTC
[ENA]
¡û
>W1911567441
PCPP01000001
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
134171
134243
+
Glu
TTC
[ENA]
¡û
>W1911586420
PIZV01000069
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
19448
19376
-
Glu
TTC
[ENA]
¡û
>W1911647536
QAJO01000002
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
279127
279055
-
Glu
TTC
[ENA]
¡û
>W1911680449
QICI01000103
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
10862
10934
+
Glu
TTC
[ENA]
¡û
>W1911680517
QICX01000016
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
19019
19091
+
Glu
TTC
[ENA]
¡û
>W1911701811
QNVT01000017
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
85957
85885
-
Glu
TTC
[ENA]
¡û
>W1810234083
PPED02000006
Bacteroidota
Chryseobacterium phosphatilyticum ISE14 [PPED]
108559
108487
-
Glu
TTC
[ENA]
¡û
>W1810234237
PPEG02000006
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
272160
272088
-
Glu
TTC
[ENA]
¡û
>W1810234294
PPEH01000003
Bacteroidota
Chryseobacterium lactis NCTC11390 [PPEH]
346980
346908
-
Glu
TTC
[ENA]
¡û
>W1810234403
PPEI02000005
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
269586
269514
-
Glu
TTC
[ENA]
¡û
>W1810385690
PXUE01000004
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
264318
264246
-
Glu
TTC
[ENA]
¡û
>W1810475454
QAJA01000773
Bacteroidota
Chryseobacterium sp. HMWF028 [QAJA]
1829
1901
+
Glu
TTC
[ENA]
¡û
>W1810538605
QDFZ01000009
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
30636
30564
-
Glu
TTC
[ENA]
¡û
>W1810609222
QGTV01000007
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
116037
115965
-
Glu
TTC
[ENA]
¡û
>C151002578
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1128425
1128497
+
Glu
TTC
[Ensembl]
¡û
>C151002580
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1128925
1128999
+
Glu
TTC
[Ensembl]
¡û
>W1511432218
JUGI01000020
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
114601
114673
+
Glu
TTC
[ENA]
¡û
>W1511432467
JUGN01000015
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
121087
121159
+
Glu
TTC
[ENA]
¡û
>W1511432541
JUGO01000013
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
123400
123472
+
Glu
TTC
[ENA]
¡û
>W1511432598
JUGP01000008
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
157173
157101
-
Glu
TTC
[ENA]
¡û
>W1511587142
LAZY01000022
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
53400
53472
+
Glu
TTC
[ENA]
¡û
>W1610205670
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
15396
15324
-
Glu
TTC
[ENA]
¡û
>W1610436670
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
301343
301271
-
Glu
TTC
[ENA]
¡û
>W1610943293
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
297689
297617
-
Glu
TTC
[ENA]
¡û
>W1611061669
MAYF01000311
Bacteroidota
Chryseobacterium contaminans [MAYF]
17842
17770
-
Glu
TTC
[ENA]
¡û
>W1611061757
MAYG01000023
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
129146
129218
+
Glu
TTC
[ENA]
¡û
>W1611061834
MAYH01000050
Bacteroidota
Chryseobacterium artocarpi [MAYH]
103362
103290
-
Glu
TTC
[ENA]
¡û
>W1710207171
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
15396
15324
-
Glu
TTC
[ENA]
¡û
>W1710436406
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
301343
301271
-
Glu
TTC
[ENA]
¡û
>W1710518836
FNEG01000009
Bacteroidota
Chryseobacterium jejuense [FNEG]
40399
40327
-
Glu
TTC
[ENA]
¡û
>W1710518838
FNEG01000009
Bacteroidota
Chryseobacterium jejuense [FNEG]
39913
39839
-
Glu
TTC
[ENA]
¡û
>W1710540329
FNWQ01000005
Bacteroidota
Chryseobacterium culicis [FNWQ]
273925
273853
-
Glu
TTC
[ENA]
¡û
>W1710591111
FRBM01000008
Bacteroidota
Chryseobacterium contaminans [FRBM]
126978
127050
+
Glu
TTC
[ENA]
¡û
>W1710596692
FTMT01000015
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
18858
18930
+
Glu
TTC
[ENA]
¡û
>W1710598447
FTNZ01000007
Bacteroidota
Chryseobacterium joostei [FTNZ]
116524
116596
+
Glu
TTC
[ENA]
¡û
>W1710599091
FTOL01000006
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
104348
104276
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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