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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350396 (96 seq.)
>W131058338
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
4532646
4532575
-
Gly
CCC
[ENA]
¡û
>W1711081237
LSSA01000182
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
18709
18638
-
Gly
CCC
[ENA]
¡û
>W1711120908
LUHJ01000013
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
141910
141981
+
Gly
CCC
[ENA]
¡û
>W1711335742
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
241370
241441
+
Gly
CCC
[ENA]
¡û
>W131090003
AOFE01000073
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
33294
33223
-
Gly
CCC
[ENA]
¡û
>W1711577091
MNPM01000018
Cyanobacteriota
Mastigocladus laminosus 74 [MNPM]
332786
332715
-
Gly
CCC
[ENA]
¡û
>W1711666513
MRCA01000008
Cyanobacteriota
Fischerella major NIES-592 [MRCA]
160535
160606
+
Gly
CCC
[ENA]
¡û
>W1711711348
MTAV01000201
Cyanobacteriota
Nostoc sp. T09 [MTAV]
40762
40691
-
Gly
CCC
[ENA]
¡û
>W1711711371
MTAW01000118
Cyanobacteriota
Nostoc sp. 106C [MTAW]
8579
8650
+
Gly
CCC
[ENA]
¡û
>W1711711412
MTAX01000010
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
43897
43826
-
Gly
CCC
[ENA]
¡û
>C001224
CP000117
Cyanobacteriota
Trichormus variabilis ATCC 29413 [CP000117]
5209484
5209413
-
Gly
CCC
[Ensembl]
¡û
>W131036496
ALVS01000068
Cyanobacteriota
Fischerella sp. PCC 9339 [ALVS]
290997
290926
-
Gly
CCC
[ENA]
¡û
>C015305
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
1819848
1819777
-
Gly
CCC
[Ensembl]
¡û
>w021694
AAVW01000034
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
34354
34428
+
Gly
CCC
[ENA]
¡û
>W141021278
AJLJ01000368
Cyanobacteriota
Fischerella muscicola SAG 1427-1 = PCC 73103 [AJLJ]
5462
5388
-
Gly
CCC
[ENA]
¡û
>W141021320
AJLK01000141
Cyanobacteriota
Fischerella muscicola PCC 7414 [AJLK]
11869
11940
+
Gly
CCC
[ENA]
¡û
>W141021366
AJLL01000078
Cyanobacteriota
Fischerella thermalis PCC 7521 [AJLL]
28142
28071
-
Gly
CCC
[ENA]
¡û
>W141038348
ALVT01000001
Cyanobacteriota
Fischerella sp. PCC 9605 [ALVT]
224995
225066
+
Gly
CCC
[ENA]
¡û
>W141038514
ALVX01000020
Cyanobacteriota
Fischerella sp. PCC 9431 [ALVX]
244402
244331
-
Gly
CCC
[ENA]
¡û
>W141091951
AUZM01000025
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
80641
80570
-
Gly
CCC
[ENA]
¡û
>WENV183514278
OMKS01015061
[OMKS] sediment metagenome; hot spring sediment
3735
3807
+
Gly
CCC
[ENA]
¢þ
>WENV183680443
ORMF010182859
[ORMF] groundwater metagenome; groundwater
352
426
+
Gly
TCC
[ENA]
¢þ
>WENV170996188
MWWF01170672
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
314
385
+
Gly
CCC
[ENA]
¢þ
>WENV171003085
NNBT01000305
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
510
439
-
Gly
CCC
[ENA]
¢þ
>C181004804
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1687218
1687147
-
Gly
CCC
-
¡û
>C181043623
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
3096518
3096589
+
Gly
CCC
-
¡û
>C181078404
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
1431243
1431314
+
Gly
CCC
-
¡û
>W09101155
AAEA01000007
Cyanobacteriota
Trichormus variabilis ATCC 29413 [AAEA]
49777
49706
-
Gly
CCC
[ENA]
¡û
>W1910008399
BDGE01000035
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
85016
85087
+
Gly
CCC
[ENA]
¡û
>W1910596187
LAGX01000021
Cyanobacteriota
Nostoc linckia z1 [LAGX]
62241
62168
-
Gly
CCC
[ENA]
¡û
>W1910596269
LAGY01000031
Cyanobacteriota
Nostoc linckia z2 [LAGY]
64820
64747
-
Gly
CCC
[ENA]
¡û
>W1910596368
LAGZ01000019
Cyanobacteriota
Nostoc linckia z3 [LAGZ]
64877
64804
-
Gly
CCC
[ENA]
¡û
>W1910596453
LAHA01000019
Cyanobacteriota
Nostoc linckia z4 [LAHA]
62224
62151
-
Gly
CCC
[ENA]
¡û
>W1910596888
LAHF01000063
Cyanobacteriota
Nostoc linckia z13 [LAHF]
22169
22242
+
Gly
CCC
[ENA]
¡û
>W1910597152
LAHI01000084
Cyanobacteriota
Nostoc linckia z16 [LAHI]
13062
12989
-
Gly
CCC
[ENA]
¡û
>W1910597179
LAHJ01000012
Cyanobacteriota
Nostoc linckia z18 [LAHJ]
42864
42937
+
Gly
CCC
[ENA]
¡û
>W1910792690
MRBZ01000102
Cyanobacteriota
Nostoc calcicola FACHB-389 [MRBZ]
11404
11333
-
Gly
CCC
[ENA]
¡û
>W1910842096
NAPS01000002
Cyanobacteriota
Westiellopsis prolifica IICB1 [NAPS]
1618790
1618719
-
Gly
CCC
[ENA]
¡û
>W1910896846
NGAA01000052
Cyanobacteriota
Fischerella thermalis 111/344/542 [NGAA]
7623
7552
-
Gly
CCC
[ENA]
¡û
>W1910899180
NGJL01000144
Cyanobacteriota
Mastigocladus laminosus WC112 [NGJL]
14384
14455
+
Gly
CCC
[ENA]
¡û
>W1910909726
NGZS01000078
Cyanobacteriota
Fischerella thermalis WC1110 [NGZS]
16388
16459
+
Gly
CCC
[ENA]
¡û
>W1910909780
NGZT01000064
Cyanobacteriota
Fischerella thermalis WC119 [NGZT]
447572
447643
+
Gly
CCC
[ENA]
¡û
>W1910909816
NGZU01000056
Cyanobacteriota
Fischerella thermalis WC114 [NGZU]
14361
14432
+
Gly
CCC
[ENA]
¡û
>W1910909869
NGZV01000098
Cyanobacteriota
Fischerella thermalis WC157 [NGZV]
31460
31389
-
Gly
CCC
[ENA]
¡û
>W1910909904
NGZW01000159
Cyanobacteriota
Fischerella thermalis WC341 [NGZW]
35493
35564
+
Gly
CCC
[ENA]
¡û
>W1910909928
NGZX01000101
Cyanobacteriota
Fischerella thermalis WC559 [NGZX]
13713
13784
+
Gly
CCC
[ENA]
¡û
>W1910909973
NGZY01000085
Cyanobacteriota
Fischerella thermalis WC558 [NGZY]
14363
14434
+
Gly
CCC
[ENA]
¡û
>W1910910010
NGZZ01000092
Cyanobacteriota
Fischerella thermalis WC542 [NGZZ]
14746
14817
+
Gly
CCC
[ENA]
¡û
>W1910910055
NHAA01000104
Cyanobacteriota
Fischerella thermalis WC538 [NHAA]
16153
16224
+
Gly
CCC
[ENA]
¡û
>W1910910103
NHAB01000118
Cyanobacteriota
Fischerella thermalis WC527 [NHAB]
31951
31880
-
Gly
CCC
[ENA]
¡û
>W1910910129
NHAC01000119
Cyanobacteriota
Fischerella thermalis WC442 [NHAC]
13896
13967
+
Gly
CCC
[ENA]
¡û
>W1910910182
NHAD01000095
Cyanobacteriota
Fischerella thermalis WC441 [NHAD]
32959
32888
-
Gly
CCC
[ENA]
¡û
>W1910910211
NHAE01000134
Cyanobacteriota
Fischerella thermalis WC439 [NHAE]
14366
14437
+
Gly
CCC
[ENA]
¡û
>W1910910237
NHAF01000044
Cyanobacteriota
Fischerella thermalis WC344 [NHAF]
39108
39179
+
Gly
CCC
[ENA]
¡û
>W1910910286
NHAG01000052
Cyanobacteriota
Fischerella thermalis WC249 [NHAG]
14336
14407
+
Gly
CCC
[ENA]
¡û
>W1910910312
NHAH01000041
Cyanobacteriota
Fischerella thermalis WC246 [NHAH]
14576
14647
+
Gly
CCC
[ENA]
¡û
>W1910910355
NHAI01000047
Cyanobacteriota
Fischerella thermalis WC245 [NHAI]
14333
14404
+
Gly
CCC
[ENA]
¡û
>W1910910394
NHAJ01000089
Cyanobacteriota
Fischerella thermalis WC217 [NHAJ]
8159
8230
+
Gly
CCC
[ENA]
¡û
>W1910910433
NHAK01000113
Cyanobacteriota
Fischerella thermalis WC213 [NHAK]
1383
1312
-
Gly
CCC
[ENA]
¡û
>W1910976694
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
1885821
1885750
-
Gly
CCC
[ENA]
¡û
>W1911070669
NMQA01000180
Cyanobacteriota
Fischerella thermalis CCMEE 5268 [NMQA]
9585
9514
-
Gly
CCC
[ENA]
¡û
>W1911070707
NMQB01000273
Cyanobacteriota
Fischerella thermalis CCMEE 5273 [NMQB]
1729
1800
+
Gly
CCC
[ENA]
¡û
>W1911070747
NMQC01000072
Cyanobacteriota
Fischerella thermalis CCMEE 5282 [NMQC]
24019
24090
+
Gly
CCC
[ENA]
¡û
>W1911070810
NMQD01001160
Cyanobacteriota
Fischerella thermalis CCMEE 5319 [NMQD]
1744
1815
+
Gly
CCC
[ENA]
¡û
>W1911070836
NMQE01000168
Cyanobacteriota
Fischerella thermalis CCMEE 5318 [NMQE]
14355
14426
+
Gly
CCC
[ENA]
¡û
>W1911070882
NMQF01000152
Cyanobacteriota
Fischerella thermalis CCMEE 5198 [NMQF]
11326
11397
+
Gly
CCC
[ENA]
¡û
>W1911070923
NMQG01000071
Cyanobacteriota
Fischerella thermalis BR2B [NMQG]
10569
10640
+
Gly
CCC
[ENA]
¡û
>W1911070954
NMQH01000035
Cyanobacteriota
Fischerella thermalis CCMEE 5208 [NMQH]
1710
1639
-
Gly
CCC
[ENA]
¡û
>W1911071000
NMQI01000163
Cyanobacteriota
Fischerella thermalis CCMEE 5330 [NMQI]
3300
3371
+
Gly
CCC
[ENA]
¡û
>W1911071044
NMQJ01000261
Cyanobacteriota
Fischerella thermalis CCMEE 5205 [NMQJ]
10417
10488
+
Gly
CCC
[ENA]
¡û
>W1911071088
NMQK01000318
Cyanobacteriota
Fischerella thermalis CCMEE 5201 [NMQK]
459
388
-
Gly
CCC
[ENA]
¡û
>W1911178234
NQMD01000972
Cyanobacteriota
Fischerella thermalis CCMEE 5196 [NQMD]
5779
5850
+
Gly
CCC
[ENA]
¡û
>W1911178275
NQME01000395
Cyanobacteriota
Fischerella thermalis CCMEE 5194 [NQME]
198
127
-
Gly
CCC
[ENA]
¡û
>W1911178315
NQMF01000947
Cyanobacteriota
Fischerella thermalis CCMEE 5328 [NQMF]
1589
1518
-
Gly
CCC
[ENA]
¡û
>W1911218644
NRQW01000387
Cyanobacteriota
Fischerella muscicola CCMEE 5323 [NRQW]
11923
11994
+
Gly
CCC
[ENA]
¡û
>W1810076201
PEIG01000005
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
312186
312115
-
Gly
CCC
[ENA]
¡û
>W1810296723
PTJN01000105
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
489
418
-
Gly
CCC
[ENA]
¡û
>W1511397000
JTCM01000002
Cyanobacteriota
Hassalia byssoidea VB512170 [JTCM]
811717
811788
+
Gly
CCC
[ENA]
¡û
>W1511501709
JXCB01000004
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
1707831
1707760
-
Gly
CCC
[ENA]
¡û
>W1511504598
JXIJ01000153
Cyanobacteriota
Mastigocladus laminosus UU774 [JXIJ]
332786
332715
-
Gly
CCC
[ENA]
¡û
>W11181305
AGIZ01000013
Cyanobacteriota
Fischerella thermalis JSC-11 [AGIZ]
28200
28129
-
Gly
CCC
[ENA]
¡û
>C161002617
AP017305
Cyanobacteriota
Fischerella sp. NIES-3754 [AP017305]
2890494
2890565
+
Gly
CCC
[Ensembl]
¡û
>C161005343
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
4651906
4651835
-
Gly
CCC
[Ensembl]
¡û
>C161038931
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
777645
777574
-
Gly
CCC
[Ensembl]
¡û
>W1610003580
AGCR01000114
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1698
1627
-
Gly
CCC
[ENA]
¡û
>C131004169
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3664540
3664469
-
Gly
CCC
[Ensembl]
¡û
>C131004257
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
1137399
1137470
+
Gly
CCC
[Ensembl]
¡û
>C131004999
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
1705307
1705236
-
Gly
CCC
[Ensembl]
¡û
>W1610656812
LJOR01000055
Cyanobacteriota
Anabaena sp. 39858 [LJOR]
5172
5101
-
Gly
CCC
[ENA]
¡û
>W1610932128
LUHI01000047
Cyanobacteriota
Anabaena sp. CA = ATCC 33047 [LUHI]
61716
61787
+
Gly
CCC
[ENA]
¡û
>W1610932145
LUHJ01000013
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
141910
141981
+
Gly
CCC
[ENA]
¡û
>W1610979384
LWAJ01000087
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
51441
51512
+
Gly
CCC
[ENA]
¡û
>W1611066449
MBRD01000002
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
241370
241441
+
Gly
CCC
[ENA]
¡û
>W1710004200
AGCR01000114
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
1698
1627
-
Gly
CCC
[ENA]
¡û
>W1710087976
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
3224659
3224730
+
Gly
CCC
[ENA]
¡û
>W1710088017
BDUC01000002
Cyanobacteriota
Tolypothrix sp. NIES-4075 [BDUC]
917247
917176
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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