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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350519 (22 seq.)
>W1710875556
LMOM01000021
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
96870
96944
+
Ala
TGC
[ENA]
¡û
>W131104590
APCS01000084
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
18307
18381
+
Ala
TGC
[ENA]
¡û
>C007935
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
564388
564462
+
Ala
TGC
[Ensembl]
¡û
>WENV180231911
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
131609
131535
-
Ala
TGC
[ENA]
¢þ
>WENV180232920
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
131609
131535
-
Ala
TGC
[ENA]
¢þ
>WENV180569732
OCLR01000374
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
33322
33396
+
Ala
TGC
[ENA]
¢þ
>WENV180570683
OCLS01000399
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
31631
31705
+
Ala
TGC
[ENA]
¢þ
>WENV180571280
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
131609
131535
-
Ala
TGC
[ENA]
¢þ
>WENV180573519
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
131609
131535
-
Ala
TGC
[ENA]
¢þ
>WENV180639592
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
131609
131535
-
Ala
TGC
[ENA]
¢þ
>WENV180640520
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
131609
131535
-
Ala
TGC
[ENA]
¢þ
>W141154781
AXLL01000095
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
3366
3292
-
Ala
TGC
[ENA]
¡û
>WENV183636518
OOKD01041298
[OOKD] human gut metagenome; Skin biopsy
175
101
-
Ala
TGC
[ENA]
¢þ
>C181196477
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
1719858
1719784
-
Ala
TGC
-
¡û
>W141561447
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
131901
131827
-
Ala
TGC
[ENA]
¡û
>W141702050
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
131786
131712
-
Ala
TGC
[ENA]
¡û
>W1911802486
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
480860
480934
+
Ala
TGC
[ENA]
¡û
>C10105337
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
564388
564462
+
Ala
TGC
[Ensembl]
¡û
>C11107264
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
564388
564462
+
Ala
TGC
[Ensembl]
¡û
>C121002088
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
2385185
2385111
-
Ala
TGC
[Ensembl]
¡û
>C161082982
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2161194
2161120
-
Ala
TGC
-
¡û
>W1610737902
LMOM01000021
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
96870
96944
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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