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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350812 (119 seq.)
>W1710804048
LJYY01000047
Bacillota
Lysinibacillus sphaericus [LJYY]
134
208
+
Met
CAT
[ENA]
¡û
>W1710811139
LKIE01000112
Bacillota
Lysinibacillus sp. F5 [LKIE]
636
710
+
Met
CAT
[ENA]
¡û
>W1710811156
LKIE01000113
Bacillota
Lysinibacillus sp. F5 [LKIE]
540
614
+
Met
CAT
[ENA]
¡û
>W1710819554
LKPY01000002
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
143044
142970
-
Met
CAT
[ENA]
¡û
>W1710819580
LKPY01000026
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
348
422
+
Met
CAT
[ENA]
¡û
>W1710819616
LKPY01000078
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
528
602
+
Met
CAT
[ENA]
¡û
>W1711179065
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
3215502
3215428
-
Met
CAT
[ENA]
¡û
>W1711179090
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
2927781
2927707
-
Met
CAT
[ENA]
¡û
>W1711179110
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
2920259
2920185
-
Met
CAT
[ENA]
¡û
>W1711352865
MDDN01000012
Bacillota
Lysinibacillus xylanilyticus [MDDN]
120383
120309
-
Met
CAT
[ENA]
¡û
>W1711352909
MDDN01000040
Bacillota
Lysinibacillus xylanilyticus [MDDN]
1292
1366
+
Met
CAT
[ENA]
¡û
>W1711383670
MECQ01000001
Bacillota
Lysinibacillus fusiformis [MECQ]
3602368
3602294
-
Met
CAT
[ENA]
¡û
>w023414
AAXV01000070
Bacillota
Bacillus sp. B14905 [AAXV]
195
271
+
Met
CAT
[ENA]
¡û
>w023404
AAXV01000035
Bacillota
Bacillus sp. B14905 [AAXV]
196
272
+
Met
CAT
[ENA]
¡û
>W141186508
AYKQ01000010
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
255928
255854
-
Met
CAT
[ENA]
¡û
>W141186530
AYKQ01000011
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
508
434
-
Met
CAT
[ENA]
¡û
>W141186563
AYKQ01000040
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
7102
7028
-
Met
CAT
[ENA]
¡û
>W141186588
AYKQ01000056
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
157
83
-
Met
CAT
[ENA]
¡û
>W141186613
AYKQ01000062
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
519
445
-
Met
CAT
[ENA]
¡û
>W141186629
AYKQ01000065
Bacillota
Lysinibacillus sphaericus CBAM5 [AYKQ]
494
567
+
Met
CAT
[ENA]
¡û
>W141187896
AYMK01000032
Bacillota
Lysinibacillus fusiformis H1k [AYMK]
66090
66016
-
Met
CAT
[ENA]
¡û
>W141187925
AYMK01000046
Bacillota
Lysinibacillus fusiformis H1k [AYMK]
697
623
-
Met
CAT
[ENA]
¡û
>C08006227
CP000817
Bacillota
Lysinibacillus sphaericus C3-41 [CP000817]
363181
363255
+
Met
CAT
[Ensembl]
¡û
>C08006285
CP000817
Bacillota
Lysinibacillus sphaericus C3-41 [CP000817]
4166280
4166209
-
Met
CAT
[Ensembl]
¡û
>WENV170965214
MTET01004696
[MTET] soil metagenome; garden soil control
4237
4311
+
Met
CAT
[ENA]
¢þ
>WENV170965416
MTEU01002080
[MTEU] soil metagenome; naturally attenuated soil
1259
1333
+
Met
CAT
[ENA]
¢þ
>WENV170965987
MTEV01011550
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
749
675
-
Met
CAT
[ENA]
¢þ
>WENV170966586
MTEX01014313
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
162
88
-
Met
CAT
[ENA]
¢þ
>C181125166
CP026007
Bacillota
Lysinibacillus sp. YS11 [CP026007]
3553131
3553057
-
Met
CAT
-
¡û
>C181125186
CP026007
Bacillota
Lysinibacillus sp. YS11 [CP026007]
3545566
3545492
-
Met
CAT
-
¡û
>C181147666
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
320046
320120
+
Met
CAT
-
¡û
>C181147703
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
4695340
4695266
-
Met
CAT
-
¡û
>C181147728
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
4270477
4270403
-
Met
CAT
-
¡û
>C181147748
CP027224
Bacillota
Lysinibacillus sp. B2A1 [CP027224]
4262772
4262698
-
Met
CAT
-
¡û
>C191040659
CP026120
Bacillota
Lysinibacillus sphaericus KCCM 35418 [CP026120]
2539019
2538945
-
Met
CAT
-
¡û
>C191040679
CP026120
Bacillota
Lysinibacillus sphaericus KCCM 35418 [CP026120]
2531504
2531430
-
Met
CAT
-
¡û
>W141800927
JPDJ01000141
Bacillota
Lysinibacillus sphaericus [JPDJ]
252
178
-
Met
CAT
[ENA]
¡û
>W141800945
JPDK01000036
Bacillota
Lysinibacillus sphaericus [JPDK]
351
277
-
Met
CAT
[ENA]
¡û
>W141800978
JPDL01000042
Bacillota
Lysinibacillus sphaericus [JPDL]
139187
139113
-
Met
CAT
[ENA]
¡û
>W141801005
JPDM01000129
Bacillota
Lysinibacillus sphaericus [JPDM]
115
41
-
Met
CAT
[ENA]
¡û
>W141801554
JPEF01000001
Bacillota
Lysinibacillus fusiformis [JPEF]
711821
711747
-
Met
CAT
[ENA]
¡û
>W141801579
JPEF01000001
Bacillota
Lysinibacillus fusiformis [JPEF]
402393
402319
-
Met
CAT
[ENA]
¡û
>W141801599
JPEF01000001
Bacillota
Lysinibacillus fusiformis [JPEF]
394874
394800
-
Met
CAT
[ENA]
¡û
>W141810291
JPUW01000012
Bacillota
Lysinibacillus sp. BF-4 [JPUW]
581
655
+
Met
CAT
[ENA]
¡û
>W141822576
JRBA01000012
Bacillota
Lysinibacillus fusiformis [JRBA]
72440
72366
-
Met
CAT
[ENA]
¡û
>W141822609
JRBA01000019
Bacillota
Lysinibacillus fusiformis [JRBA]
1448066
1447992
-
Met
CAT
[ENA]
¡û
>W1911285075
NTMQ01000004
Bacillota
Lysinibacillus fusiformis GM [NTMQ]
301427
301501
+
Met
CAT
[ENA]
¡û
>W1810054425
PDFK01000002
Bacillota
Lysinibacillus fusiformis Juneja [PDFK]
638259
638185
-
Met
CAT
[ENA]
¡û
>W1810054445
PDFK01000002
Bacillota
Lysinibacillus fusiformis Juneja [PDFK]
630624
630550
-
Met
CAT
[ENA]
¡û
>W1810054466
PDFK01000007
Bacillota
Lysinibacillus fusiformis Juneja [PDFK]
135250
135324
+
Met
CAT
[ENA]
¡û
>W1810118715
PHQY01000008
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
693
619
-
Met
CAT
[ENA]
¡û
>W1810118803
PHQY01000684
Bacillota
Lysinibacillus xylanilyticus t26 [PHQY]
974
1048
+
Met
CAT
[ENA]
¡û
>W1810389750
PXXX01000035
Bacillota
Lysinibacillus capsici PB300 [PXXX]
545
619
+
Met
CAT
[ENA]
¡û
>W1810426498
PYWG01000004
Bacillota
Lysinibacillus parviboronicapiens VT1065 [PYWG]
234537
234463
-
Met
CAT
[ENA]
¡û
>W1810426526
PYWG01000031
Bacillota
Lysinibacillus parviboronicapiens VT1065 [PYWG]
838
912
+
Met
CAT
[ENA]
¡û
>W1810426546
PYWG01000044
Bacillota
Lysinibacillus parviboronicapiens VT1065 [PYWG]
721
795
+
Met
CAT
[ENA]
¡û
>W1810426658
PYWI01000015
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
1058
1132
+
Met
CAT
[ENA]
¡û
>W1810426703
PYWI01000075
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
574
500
-
Met
CAT
[ENA]
¡û
>W1810426721
PYWI01000091
Bacillota
Lysinibacillus parviboronicapiens BAM-582 [PYWI]
724
798
+
Met
CAT
[ENA]
¡û
>W1810426906
PYWL01000006
Bacillota
Lysinibacillus fusiformis ATCC 7055 [PYWL]
1583
1657
+
Met
CAT
[ENA]
¡û
>W1810426926
PYWL01000006
Bacillota
Lysinibacillus fusiformis ATCC 7055 [PYWL]
9098
9172
+
Met
CAT
[ENA]
¡û
>W1810471055
QAFW01000033
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
24420
24346
-
Met
CAT
[ENA]
¡û
>W1810471076
QAFW01000074
Bacillota
Metalysinibacillus jejuensis N25 [QAFW]
6114
6040
-
Met
CAT
[ENA]
¡û
>C151073011
CP010820
Bacillota
Lysinibacillus fusiformis RB-21 [CP010820]
821289
821363
+
Met
CAT
[Ensembl]
¡û
>C151073036
CP010820
Bacillota
Lysinibacillus fusiformis RB-21 [CP010820]
1130717
1130791
+
Met
CAT
[Ensembl]
¡û
>C151073056
CP010820
Bacillota
Lysinibacillus fusiformis RB-21 [CP010820]
1138236
1138310
+
Met
CAT
[Ensembl]
¡û
>W1511316213
JPVR01000023
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [JPVR]
416
342
-
Met
CAT
[ENA]
¡û
>W1511392262
JSZM01000024
Bacillota
Lysinibacillus sp. A1 [JSZM]
615
689
+
Met
CAT
[ENA]
¡û
>W1511392281
JSZM01000045
Bacillota
Lysinibacillus sp. A1 [JSZM]
701
627
-
Met
CAT
[ENA]
¡û
>W1511640692
LDUJ01000052
Bacillota
Lysinibacillus sp. LK3 [LDUJ]
814
888
+
Met
CAT
[ENA]
¡û
>W1511689824
LFXJ01000008
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
6672
6746
+
Met
CAT
[ENA]
¡û
>W1511689838
LFXJ01000012
Bacillota
Lysinibacillus xylanilyticus DSM 23493 [LFXJ]
452
526
+
Met
CAT
[ENA]
¡û
>W1511694868
LGCI01000006
Bacillota
Lysinibacillus macroides DSM 54 [LGCI]
331346
331272
-
Met
CAT
[ENA]
¡û
>W1511694896
LGCI01000010
Bacillota
Lysinibacillus macroides DSM 54 [LGCI]
1102862
1102788
-
Met
CAT
[ENA]
¡û
>C161074935
CP014643
Bacillota
Lysinibacillus sphaericus OT4b.25 [CP014643]
1377907
1377981
+
Met
CAT
-
¡û
>C161074960
CP014643
Bacillota
Lysinibacillus sphaericus OT4b.25 [CP014643]
1665653
1665727
+
Met
CAT
-
¡û
>C161074980
CP014643
Bacillota
Lysinibacillus sphaericus OT4b.25 [CP014643]
1673175
1673249
+
Met
CAT
-
¡û
>C161078468
CP014856
Bacillota
Lysinibacillus sphaericus [CP014856]
4383393
4383319
-
Met
CAT
-
¡û
>C161078488
CP014856
Bacillota
Lysinibacillus sphaericus [CP014856]
4375871
4375797
-
Met
CAT
-
¡û
>C161078520
CP014856
Bacillota
Lysinibacillus sphaericus [CP014856]
17948
17874
-
Met
CAT
-
¡û
>C161084712
CP015224
Bacillota
Lysinibacillus sphaericus 2362 [CP015224]
3119643
3119569
-
Met
CAT
-
¡û
>C161084737
CP015224
Bacillota
Lysinibacillus sphaericus 2362 [CP015224]
2831939
2831865
-
Met
CAT
-
¡û
>C161084757
CP015224
Bacillota
Lysinibacillus sphaericus 2362 [CP015224]
2824417
2824343
-
Met
CAT
-
¡û
>W1610045517
BBBP01000102
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
933
1007
+
Met
CAT
[ENA]
¡û
>W1610045524
BBBP01000106
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
637
563
-
Met
CAT
[ENA]
¡û
>W1610045532
BBBP01000116
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
368
294
-
Met
CAT
[ENA]
¡û
>W1610047548
BBDJ01000043
Bacillota
Lysinibacillus pakistanensis [BBDJ]
595
669
+
Met
CAT
[ENA]
¡û
>W1610047565
BBDJ01000070
Bacillota
Lysinibacillus pakistanensis [BBDJ]
431
505
+
Met
CAT
[ENA]
¡û
>W1610073510
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
1315
1389
+
Met
CAT
[ENA]
¡û
>W1610667905
LJYY01000047
Bacillota
Lysinibacillus sphaericus [LJYY]
134
208
+
Met
CAT
[ENA]
¡û
>W1610675194
LKIE01000112
Bacillota
Lysinibacillus sp. F5 [LKIE]
636
710
+
Met
CAT
[ENA]
¡û
>W1610675211
LKIE01000113
Bacillota
Lysinibacillus sp. F5 [LKIE]
540
614
+
Met
CAT
[ENA]
¡û
>W1610683516
LKPY01000002
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
143044
142970
-
Met
CAT
[ENA]
¡û
>W1610683542
LKPY01000026
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
348
422
+
Met
CAT
[ENA]
¡û
>W1610683578
LKPY01000078
Bacillota
Lysinibacillus sp. ZYM-1 [LKPY]
528
602
+
Met
CAT
[ENA]
¡û
>W1610987017
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
3215502
3215428
-
Met
CAT
[ENA]
¡û
>W1610987042
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
2927781
2927707
-
Met
CAT
[ENA]
¡û
>W1610987062
LWHI01000001
Bacillota
Lysinibacillus sphaericus [LWHI]
2920259
2920185
-
Met
CAT
[ENA]
¡û
>W1630001954
BBCN01000104
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
440
515
+
Met
CAT
[ENA]
¡û
>W1730001284
BBCN01000104
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [BBCN]
440
515
+
Met
CAT
[ENA]
¡û
>W1710022857
AVCW01000059
Bacillota
Lysinibacillus boronitolerans JCM 21713 = 10a = NBRC 103108 [AVCW]
416
342
-
Met
CAT
[ENA]
¡û
>W1710042358
BBBP01000102
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
933
1007
+
Met
CAT
[ENA]
¡û
>W1710042365
BBBP01000106
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
637
563
-
Met
CAT
[ENA]
¡û
>W1710042373
BBBP01000116
Bacillota
Lysinibacillus parviboronicapiens JCM 18861 [BBBP]
368
294
-
Met
CAT
[ENA]
¡û
>W1710044153
BBDJ01000043
Bacillota
Lysinibacillus pakistanensis [BBDJ]
595
669
+
Met
CAT
[ENA]
¡û
>W1710044170
BBDJ01000070
Bacillota
Lysinibacillus pakistanensis [BBDJ]
431
505
+
Met
CAT
[ENA]
¡û
>W1710070628
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
1315
1389
+
Met
CAT
[ENA]
¡û
>W1710506023
FMUG01000021
Bacillota
Lysinibacillus fusiformis SG8 [FMUG]
79053
78979
-
Met
CAT
[ENA]
¡û
>W1710506047
FMUG01000033
Bacillota
Lysinibacillus fusiformis SG8 [FMUG]
6582
6508
-
Met
CAT
[ENA]
¡û
>W1710507871
FMVP01000018
Bacillota
Lysinibacillus fusiformis LD79 [FMVP]
70566
70492
-
Met
CAT
[ENA]
¡û
>W1710510236
FMXU01000036
Bacillota
Lysinibacillus sp. TC-37 [FMXU]
4323
4249
-
Met
CAT
[ENA]
¡û
>W1710510685
FMYD01000023
Bacillota
Lysinibacillus fusiformis BC-14 [FMYD]
57
131
+
Met
CAT
[ENA]
¡û
>W1710510698
FMYD01000034
Bacillota
Lysinibacillus fusiformis BC-14 [FMYD]
57
131
+
Met
CAT
[ENA]
¡û
>W1710564662
FOQQ01000013
Bacillota
Lysinibacillus fusiformis SG53 [FOQQ]
199227
199153
-
Met
CAT
[ENA]
¡û
>W1710575990
FOZQ01000036
Bacillota
Lysinibacillus sp. SG55 [FOZQ]
4323
4249
-
Met
CAT
[ENA]
¡û
>W1710586662
FQXJ01000021
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
63675
63601
-
Met
CAT
[ENA]
¡û
>W1710603192
FUYW01000007
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
175722
175648
-
Met
CAT
[ENA]
¡û
>W1710603215
FUYW01000020
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
478
552
+
Met
CAT
[ENA]
¡û
>W1710603237
FUYW01000024
Bacillota
Lysinibacillus sp. AC-3 [FUYW]
528
602
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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