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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.350818 (25 seq.)
>W1711091118
LTBC01000020
Bacillota
Moorella mulderi DSM 14980 [LTBC]
16658
16584
-
Met
CAT
[ENA]
¡û
>W1711352290
MDDB01000004
Bacillota
Moorella thermoacetica [MDDB]
235029
235103
+
Met
CAT
[ENA]
¡û
>W1711352305
MDDC01000001
Bacillota
Moorella thermoacetica [MDDC]
200356
200430
+
Met
CAT
[ENA]
¡û
>W1711352385
MDDD01000008
Bacillota
Moorella thermoacetica [MDDD]
46202
46128
-
Met
CAT
[ENA]
¡û
>W1711352445
MDDE01000007
Bacillota
Moorella thermoacetica [MDDE]
2879
2805
-
Met
CAT
[ENA]
¡û
>W1711428558
MIHH01000014
Bacillota
Moorella thermoacetica [MIHH]
15303
15229
-
Met
CAT
[ENA]
¡û
>W1711428613
MIIF01000022
Bacillota
Moorella thermoacetica [MIIF]
16572
16646
+
Met
CAT
[ENA]
¡û
>C014172
CP000232
Bacillota
Moorella thermoacetica [CP000232]
649634
649708
+
Met
CAT
[Ensembl]
¡û
>C171055187
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
808187
808261
+
Met
CAT
-
¡û
>C171058953
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
576414
576488
+
Met
CAT
-
¡û
>WENV181408750
OGCH01011833
[OGCH] hot springs metagenome; hot springs
4
78
+
Ile2
CAT
[ENA]
¢þ
>W141229813
BARR01000033
Bacillota
Moorella thermoacetica Y72 [BARR]
140827
140901
+
Met
CAT
[ENA]
¡û
>WENV170689058
LFRM01274767
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
371
445
+
Met
CAT
[ENA]
¢þ
>C191073429
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
656356
656430
+
Met
CAT
-
¡û
>W09100924
AADT03000007
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
10666
10592
-
Met
CAT
[ENA]
¡û
>W1910180092
BJKN01000003
Bacillota
Moorella sp. E308F [BJKN]
243149
243223
+
Met
CAT
[ENA]
¡û
>W1910180146
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
424499
424425
-
Met
CAT
[ENA]
¡û
>W1810010449
BFFN01000012
Bacillota
Moorella sp. Hama-1 [BFFN]
95421
95495
+
Met
CAT
[ENA]
¡û
>W1810367265
PVXL01000019
Bacillota
Moorella stamsii DSM 26271 [PVXL]
31689
31615
-
Met
CAT
[ENA]
¡û
>W1810367327
PVXM01000006
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
44106
44032
-
Met
CAT
[ENA]
¡û
>C151094357
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
563942
564016
+
Met
CAT
-
¡û
>C151094408
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
647830
647904
+
Met
CAT
-
¡û
>W1510100260
CELZ01000025
Bacillota
Moorella glycerini NMP [CELZ]
11996
12070
+
Met
CAT
[ENA]
¡û
>W1511570800
LAKY01000070
Bacillota
Clostridiales bacterium PH28_bin88 [LAKY]
21625
21551
-
Met
CAT
[ENA]
¡û
>W1610925317
LTBC01000020
Bacillota
Moorella mulderi DSM 14980 [LTBC]
16658
16584
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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