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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.351774 (32 seq.)
>WENV170938718
MDTG01313682
[MDTG] marine metagenome; seawater
1762
1836
+
Glu
TTC
[ENA]
¢þ
>C191226444
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
4338325
4338397
+
Glu
TTC
-
¡û
>C191226446
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
4338557
4338629
+
Glu
TTC
-
¡û
>W1910664209
MBTA01000030
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
42745
42817
+
Glu
TTC
[ENA]
¡û
>W1810090277
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
25240
25312
+
Glu
TTC
[ENA]
¡û
>W1810543363
QDKG01000002
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
541702
541774
+
Glu
TTC
[ENA]
¡û
>W1810543364
QDKG01000002
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
352742
352668
-
Glu
TTC
[ENA]
¡û
>W1810676170
QKLU01000009
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
201910
201838
-
Glu
TTC
[ENA]
¡û
>W1810693873
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
105859
105787
-
Glu
TTC
[ENA]
¡û
>W1810693877
QLLR01000004
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
104367
104295
-
Glu
TTC
[ENA]
¡û
>W1810704306
QMHP01000004
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
140612
140540
-
Glu
TTC
[ENA]
¡û
>W1810720080
QNQU01000009
Bacteroidota
Pedobacter miscanthi RS10 [QNQU]
100
172
+
Glu
TTC
[ENA]
¡û
>W1810789220
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1062153
1062225
+
Glu
TTC
[ENA]
¡û
>W1810789221
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
1085065
1085138
+
Glu
TTC
[ENA]
¡û
>W1511206105
JMTN01000005
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
54397
54323
-
Glu
TTC
[ENA]
¡û
>W1511390956
JSYN01000005
Bacteroidota
Pedobacter kyungheensis KACC 16221 [JSYN]
109361
109287
-
Glu
TTC
[ENA]
¡û
>W1511509414
JXRA01000026
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
115
41
-
Glu
TTC
[ENA]
¡û
>C161049122
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
616989
617063
+
Glu
TTC
[Ensembl]
¡û
>C161049124
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
617246
617320
+
Glu
TTC
[Ensembl]
¡û
>C161073017
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5409869
5409943
+
Glu
TTC
[Ensembl]
¡û
>C161073021
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5411368
5411440
+
Glu
TTC
[Ensembl]
¡û
>W1610867553
LQXS01000004
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
227050
227124
+
Glu
TTC
[ENA]
¡û
>W1610867557
LQXS01000004
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
52264
52190
-
Glu
TTC
[ENA]
¡û
>W1710522147
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
50663
50589
-
Glu
TTC
[ENA]
¡û
>W1710522151
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
31078
31004
-
Glu
TTC
[ENA]
¡û
>W1710533302
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
87247
87319
+
Glu
TTC
[ENA]
¡û
>W1710533306
FNRA01000006
Bacteroidota
Pedobacter hartonius [FNRA]
87711
87785
+
Glu
TTC
[ENA]
¡û
>W1710551663
FOGG01000004
Bacteroidota
Pedobacter rhizosphaerae [FOGG]
200478
200550
+
Glu
TTC
[ENA]
¡û
>W1710560866
FONS01000005
Bacteroidota
Pedobacter antarcticus [FONS]
326426
326500
+
Glu
TTC
[ENA]
¡û
>W1710603646
FUZF01000012
Bacteroidota
Sphingobacterium nematocida [FUZF]
103065
103139
+
Glu
TTC
[ENA]
¡û
>W1710603649
FUZF01000016
Bacteroidota
Sphingobacterium nematocida [FUZF]
112808
112736
-
Glu
TTC
[ENA]
¡û
>W1710606366
FWXT01000002
Bacteroidota
Pedobacter africanus [FWXT]
564137
564209
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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