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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.35195 (12 seq.)
>WENV180284493
OBID01048901
[OBID] metagenome; sludge
86
-1
-
Ser
GCT
[ENA]
¢þ
>WENV181691198
OGOZ01003399
[OGOZ] human gut metagenome; faeces
142
53
-
Ser
GCT
[ENA]
¢þ
>WENV183374112
OLXY01037546
[OLXY] human gut metagenome; feces
585
497
-
Ser
GCT
[ENA]
¢þ
>WENV183384858
OLYN01017287
[OLYN] human gut metagenome; feces
1468
1379
-
Ser
GCT
[ENA]
¢þ
>WENV183448013
OMCS01074355
[OMCS] human gut metagenome; feces
68
157
+
Ser
GCT
[ENA]
¢þ
>C181115587
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1011996
1011907
-
Ser
GCT
-
¡û
>C191031590
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
977171
977082
-
Ser
GCT
-
¡û
>C191031645
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1011996
1011907
-
Ser
GCT
-
¡û
>C191072256
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1011992
1011903
-
Ser
GCT
-
¡û
>W10115301
ADJQ01000015
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
28771
28860
+
Ser
GCT
[ENA]
¡û
>C11108783
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1011995
1011906
-
Ser
GCT
[Ensembl]
¡û
>W11118887
ADJQ01000015
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
28771
28860
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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