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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.351970 (65 seq.)
>W1710876941
LMPR01000011
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
577
504
-
Gln
TTG
[ENA]
¡û
>W1710876949
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
407
335
-
Gln
TTG
[ENA]
¡û
>W1710877091
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70291
70364
+
Gln
TTG
[ENA]
¡û
>W1710877107
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76743
76815
+
Gln
TTG
[ENA]
¡û
>W1710909383
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1360
1432
+
Gln
TTG
[ENA]
¡û
>W1710909403
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258189
258262
+
Gln
TTG
[ENA]
¡û
>W1711116994
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774211
774139
-
Gln
TTG
[ENA]
¡û
>W1711117014
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
679
606
-
Gln
TTG
[ENA]
¡û
>W131202744
ASXD01000078
Bacillota
Exiguobacterium sp. S17 [ASXD]
453
381
-
Gln
TTG
[ENA]
¡û
>W1711256994
LYTG01000069
Bacillota
Exiguobacterium sp. SH31 [LYTG]
18353
18425
+
Gln
TTG
[ENA]
¡û
>W131241545
BARY01000002
Bacillota
Exiguobacterium sp. OS-77 [BARY]
261264
261337
+
Gln
TTG
[ENA]
¡û
>W131241566
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928202
928130
-
Gln
TTG
[ENA]
¡û
>W1711507289
MKXO01000008
Bacillota
Exiguobacterium aurantiacum [MKXO]
53531
53603
+
Gln
TTG
[ENA]
¡û
>W1711589647
MOEL01000005
Bacillota
Exiguobacterium sp. AT1b [MOEL]
1113
1187
+
Gln
TTG
[ENA]
¡û
>W1711589682
MOEL01000020
Bacillota
Exiguobacterium sp. AT1b [MOEL]
7680
7752
+
Gln
TTG
[ENA]
¡û
>W1711632641
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
970
1042
+
Gln
TTG
[ENA]
¡û
>W1711632658
MPSZ01000004
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
221818
221891
+
Gln
TTG
[ENA]
¡û
>W1711713082
MTCT01000004
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
314205
314277
+
Gln
TTG
[ENA]
¡û
>W1711713107
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
2191
2265
+
Gln
TTG
[ENA]
¡û
>C171040557
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162840
1162912
+
Gln
TTG
-
¡û
>C171040575
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
178974
178901
-
Gln
TTG
-
¡û
>C171072138
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
724192
724264
+
Gln
TTG
-
¡û
>C171072153
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
3002782
3002709
-
Gln
TTG
-
¡û
>W08009390
ABPF01000001
Bacillota
Exiguobacterium sp. AT1b [ABPF]
340635
340707
+
Gln
TTG
[ENA]
¡û
>W08009424
ABPF01000072
Bacillota
Exiguobacterium sp. AT1b [ABPF]
2486
2415
-
Gln
TTG
[ENA]
¡û
>WENV170022535
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
650
722
+
Gln
TTG
[ENA]
¢þ
>W141484757
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687363
1687291
-
Gln
TTG
[ENA]
¡û
>W141484797
JFYW01000010
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
242134
242207
+
Gln
TTG
[ENA]
¡û
>W141563100
JHZT01000001
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
132222
132150
-
Gln
TTG
[ENA]
¡û
>W141620189
JJMW01000033
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
1120
1194
+
Gln
TTG
[ENA]
¡û
>W141620199
JJMW01000037
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
384
312
-
Gln
TTG
[ENA]
¡û
>W141726058
JNAA01000089
Bacillota
Exiguobacterium sp. AB2 [JNAA]
1009
1083
+
Gln
TTG
[ENA]
¡û
>W141726073
JNAA01000095
Bacillota
Exiguobacterium sp. AB2 [JNAA]
457
385
-
Gln
TTG
[ENA]
¡û
>W141730882
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2696941
2696867
-
Gln
TTG
[ENA]
¡û
>W141730894
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
130409
130337
-
Gln
TTG
[ENA]
¡û
>W141730918
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
283249
283321
+
Gln
TTG
[ENA]
¡û
>W141730964
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2478066
2477993
-
Gln
TTG
[ENA]
¡û
>W141731020
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287598
2287670
+
Gln
TTG
[ENA]
¡û
>W141807050
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
225956
226030
+
Gln
TTG
[ENA]
¡û
>W141807092
JPOD01000004
Bacillota
Exiguobacterium sp. NG55 [JPOD]
352382
352454
+
Gln
TTG
[ENA]
¡û
>C09106133
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2030859
2030931
+
Gln
TTG
[Ensembl]
¡û
>C09106156
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2381304
2381378
+
Gln
TTG
[Ensembl]
¡û
>SRA1004625
SRR006906.88805
metagenomic water samples (SRP000427)
164
92
-
Gln
TTG
[SRA]
>W1810760976
QPKS01000003
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
265585
265513
-
Gln
TTG
[ENA]
¡û
>W1810823250
QSGS01000004
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
232354
232426
+
Gln
TTG
[ENA]
¡û
>W1810823262
QSGS01000012
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
54415
54341
-
Gln
TTG
[ENA]
¡û
>W1511403354
JTLB01000007
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
40348
40274
-
Gln
TTG
[ENA]
¡û
>W1511403364
JTLB01000009
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
44359
44431
+
Gln
TTG
[ENA]
¡û
>W1511403827
JTLL01000041
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
425
353
-
Gln
TTG
[ENA]
¡û
>W1511638505
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
2092152
2092078
-
Gln
TTG
[ENA]
¡û
>W1511638520
LDNY01000002
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
341843
341915
+
Gln
TTG
[ENA]
¡û
>W1511699957
LGIW01000003
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
251
324
+
Gln
TTG
[ENA]
¡û
>W1511699990
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
802
874
+
Gln
TTG
[ENA]
¡û
>W1610589662
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
844
916
+
Gln
TTG
[ENA]
¡û
>W1610589692
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18077
18150
+
Gln
TTG
[ENA]
¡û
>W1610739287
LMPR01000011
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
577
504
-
Gln
TTG
[ENA]
¡û
>W1610739295
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
407
335
-
Gln
TTG
[ENA]
¡û
>W1610739437
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
70291
70364
+
Gln
TTG
[ENA]
¡û
>W1610739453
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76743
76815
+
Gln
TTG
[ENA]
¡û
>W1610767742
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1360
1432
+
Gln
TTG
[ENA]
¡û
>W1610767762
LNQL01000004
Bacillota
Exiguobacterium enclense [LNQL]
258189
258262
+
Gln
TTG
[ENA]
¡û
>W1610928353
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774211
774139
-
Gln
TTG
[ENA]
¡û
>W1610928373
LUCU01000044
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
679
606
-
Gln
TTG
[ENA]
¡û
>W1710708942
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
844
916
+
Gln
TTG
[ENA]
¡û
>W1710708972
LDQW01000050
Bacillota
Exiguobacterium indicum [LDQW]
18077
18150
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK