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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352107 (83 seq.)
>W1711710811
MSZY01000002
Bacillota
Bacillus paralicheniformis [MSZY]
62010
62081
+
Gly
GCC
[ENA]
¡û
>W1711710826
MSZY01000002
Bacillota
Bacillus paralicheniformis [MSZY]
63376
63450
+
Gly
GCC
[ENA]
¡û
>W1711710878
MSZY01000044
Bacillota
Bacillus paralicheniformis [MSZY]
745
671
-
Gly
GCC
[ENA]
¡û
>W1711712260
MTBQ01000012
Bacillota
Oceanobacillus rekensis [MTBQ]
732
806
+
Gly
GCC
[ENA]
¡û
>W1711775075
MVJM01000004
Bacillota
Halalkalibacter urbisdiaboli 45385 [MVJM]
121369
121295
-
Gly
GCC
[ENA]
¡û
>W1711775117
MVJM01000006
Bacillota
Halalkalibacter urbisdiaboli 45385 [MVJM]
622
548
-
Gly
GCC
[ENA]
¡û
>W1711945453
NBMN01000012
Bacillota
Bacillus velezensis [NBMN]
523
597
+
Gly
GCC
[ENA]
¡û
>WENV180139254
OATS01001213
[OATS] human gut metagenome; faeces
445
371
-
Gly
GCC
[ENA]
¢þ
>WENV180305966
OBJO01019365
[OBJO] human gut metagenome; human gut
267
341
+
Gly
GCC
[ENA]
¢þ
>WENV180421983
OBVS01000037
[OBVS] human gut metagenome; faeces
39191
39265
+
Gly
GCC
[ENA]
¢þ
>WENV180422508
OBVT01005606
[OBVT] human gut metagenome; faeces
428
354
-
Gly
GCC
[ENA]
¢þ
>W141053274
ANNR02000006
Bacillota
Bacillus sp. CPSM8 [ANNR]
1108
1179
+
Gly
GCC
[ENA]
¡û
>W141053313
ANNR02000014
Bacillota
Bacillus sp. CPSM8 [ANNR]
15652
15578
-
Gly
GCC
[ENA]
¡û
>W141053325
ANNR02000025
Bacillota
Bacillus sp. CPSM8 [ANNR]
606
532
-
Gly
GCC
[ENA]
¡û
>W141191288
AYOX01000006
Bacillota
Sporosarcina pasteurii NCIM 2477 [AYOX]
384682
384608
-
Gly
GCC
[ENA]
¡û
>W141194746
AYTJ01000019
Bacillota
Bacillus velezensis GB03 [AYTJ]
133
59
-
Gly
GCC
[ENA]
¡û
>W141195074
AYTO01000018
Bacillota
Bacillus tequilensis KCTC 13622 [AYTO]
11284
11358
+
Gly
GCC
[ENA]
¡û
>W141195090
AYTO01000032
Bacillota
Bacillus tequilensis KCTC 13622 [AYTO]
198853
198779
-
Gly
GCC
[ENA]
¡û
>W141195119
AYTO01000033
Bacillota
Bacillus tequilensis KCTC 13622 [AYTO]
51309
51235
-
Gly
GCC
[ENA]
¡û
>W141265616
CCFJ01000001
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
207
133
-
Gly
GCC
[ENA]
¡û
>W141265647
CCFJ01000045
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
110498
110572
+
Gly
GCC
[ENA]
¡û
>W141265686
CCFJ01000057
Bacillota
Bacillus andreraoultii KW-12 [CCFJ]
393818
393744
-
Gly
GCC
[ENA]
¡û
>W141556623
JHUB01000045
Bacillota
Staphylococcus epidermidis VCU111 [JHUB]
340
414
+
Gly
GCC
[ENA]
¡û
>W141556655
JHUB01000065
Bacillota
Staphylococcus epidermidis VCU111 [JHUB]
466
392
-
Gly
GCC
[ENA]
¡û
>W141699440
JMID01000012
Bacillota
Staphylococcus epidermidis [JMID]
39164
39238
+
Gly
GCC
[ENA]
¡û
>W141699466
JMID01000056
Bacillota
Staphylococcus epidermidis [JMID]
683
757
+
Gly
GCC
[ENA]
¡û
>W141731718
JNJJ01000146
Bacillota
Bacillus sp. MB2021 [JNJJ]
591
665
+
Gly
GCC
[ENA]
¡û
>W1910399710
FUVD01000048
Bacillota
Staphylococcus epidermidis [FUVD]
88273
88199
-
Gly
GCC
[ENA]
¡û
>W1510596710
CUCR01000017
Bacillota
Staphylococcus haemolyticus Mar-51 [CUCR]
51704
51630
-
Gly
GCC
[ENA]
¡û
>W1510596741
CUCR01000020
Bacillota
Staphylococcus haemolyticus Mar-51 [CUCR]
38308
38382
+
Gly
GCC
[ENA]
¡û
>W1510597144
CUCZ01000019
Bacillota
Staphylococcus haemolyticus 51-13 [CUCZ]
47851
47777
-
Gly
GCC
[ENA]
¡û
>W1510597176
CUCZ01000024
Bacillota
Staphylococcus haemolyticus 51-13 [CUCZ]
38167
38241
+
Gly
GCC
[ENA]
¡û
>W1510598123
CUDQ01000023
Bacillota
Staphylococcus haemolyticus 51-33 [CUDQ]
48228
48154
-
Gly
GCC
[ENA]
¡û
>W1510598154
CUDQ01000024
Bacillota
Staphylococcus haemolyticus 51-33 [CUDQ]
38171
38245
+
Gly
GCC
[ENA]
¡û
>W1510598622
CUDZ01000023
Bacillota
Staphylococcus haemolyticus 51-42 [CUDZ]
38169
38243
+
Gly
GCC
[ENA]
¡û
>W1510598642
CUDZ01000059
Bacillota
Staphylococcus haemolyticus 51-42 [CUDZ]
2284
2210
-
Gly
GCC
[ENA]
¡û
>W1510600522
CUFI01000016
Bacillota
Staphylococcus haemolyticus F06 [CUFI]
59316
59242
-
Gly
GCC
[ENA]
¡û
>W1510600555
CUFI01000023
Bacillota
Staphylococcus haemolyticus F06 [CUFI]
38405
38479
+
Gly
GCC
[ENA]
¡û
>W1510601812
CUGF01000054
Bacillota
Staphylococcus haemolyticus 6682 [CUGF]
2163
2089
-
Gly
GCC
[ENA]
¡û
>W1510601821
CUGF01000064
Bacillota
Staphylococcus haemolyticus 6682 [CUGF]
2284
2210
-
Gly
GCC
[ENA]
¡û
>W1510603021
CUHB01000019
Bacillota
Staphylococcus haemolyticus 94759 [CUHB]
48043
47969
-
Gly
GCC
[ENA]
¡û
>W1510603052
CUHB01000021
Bacillota
Staphylococcus haemolyticus 94759 [CUHB]
529
455
-
Gly
GCC
[ENA]
¡û
>W1510603129
CUHD01000023
Bacillota
Staphylococcus haemolyticus 97208 [CUHD]
38189
38263
+
Gly
GCC
[ENA]
¡û
>W1510603149
CUHD01000070
Bacillota
Staphylococcus haemolyticus 97208 [CUHD]
2295
2221
-
Gly
GCC
[ENA]
¡û
>W1510646446
CVOK01000014
Bacillota
Staphylococcus capitis CR09 [CVOK]
470
396
-
Gly
GCC
[ENA]
¡û
>W1510646457
CVOK01000029
Bacillota
Staphylococcus capitis CR09 [CVOK]
168334
168260
-
Gly
GCC
[ENA]
¡û
>W1511437821
JULM01000034
Bacillota
Staphylococcus epidermidis 972_SEPI [JULM]
1
75
+
Gly
GCC
[ENA]
¡û
>W1511440892
JUPV01000053
Bacillota
Staphylococcus epidermidis 872_SEPI [JUPV]
1
75
+
Gly
GCC
[ENA]
¡û
>W1511445957
JUWI01000109
Bacillota
Staphylococcus epidermidis 705_SEPI [JUWI]
262
188
-
Gly
GCC
[ENA]
¡û
>W1511446260
JUWT01000020
Bacillota
Staphylococcus epidermidis 695_SEPI [JUWT]
1
75
+
Gly
GCC
[ENA]
¡û
>W1511455821
JVHB01000022
Bacillota
Staphylococcus hominis 438_SHAE [JVHB]
73
147
+
Gly
GCC
[ENA]
¡û
>W1511457747
JVIO01000016
Bacillota
Staphylococcus epidermidis 402_SEPI [JVIO]
151
225
+
Gly
GCC
[ENA]
¡û
>W1511457760
JVIO01000063
Bacillota
Staphylococcus epidermidis 402_SEPI [JVIO]
1
75
+
Gly
GCC
[ENA]
¡û
>W1511457769
JVIO01000068
Bacillota
Staphylococcus epidermidis 402_SEPI [JVIO]
1835
1761
-
Gly
GCC
[ENA]
¡û
>W1511461439
JVMM01000053
Bacillota
Staphylococcus epidermidis 295_SEPI [JVMM]
160
234
+
Gly
GCC
[ENA]
¡û
>W1511467528
JVTC01000081
Bacillota
Staphylococcus epidermidis 1337_SEPI [JVTC]
137
211
+
Gly
GCC
[ENA]
¡û
>W1511499567
JXAI01000036
Bacillota
Bacillus altitudinis DSM 26896 [JXAI]
398
472
+
Gly
GCC
[ENA]
¡û
>W1511505878
JXLS01000130
Bacillota
Caldibacillus thermoamylovorans B4065 [JXLS]
1246
1319
+
Gly
GCC
[ENA]
¡û
>W1511643010
LDWJ01000003
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
2401
2327
-
Gly
GCC
[ENA]
¡û
>W1511643044
LDWJ01000007
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
1618
1692
+
Gly
GCC
[ENA]
¡û
>W1511643071
LDWJ01000013
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
356
282
-
Gly
GCC
[ENA]
¡û
>W1511681693
LFIZ01000014
Bacillota
Bacillus safensis SCAL1 [LFIZ]
1472
1543
+
Gly
GCC
[ENA]
¡û
>W1511681713
LFIZ01000026
Bacillota
Bacillus safensis SCAL1 [LFIZ]
1382
1456
+
Gly
GCC
[ENA]
¡û
>W1511683264
LFKS01000006
Bacillota
Staphylococcus hominis As3 [LFKS]
605
679
+
Gly
GCC
[ENA]
¡û
>W1511683295
LFKS01000012
Bacillota
Staphylococcus hominis As3 [LFKS]
69001
68927
-
Gly
GCC
[ENA]
¡û
>W1511694377
LGAT01000022
Bacillota
Bacillus velezensis B26 [LGAT]
805
731
-
Gly
GCC
[ENA]
¡û
>C121003268
CP002905
Bacillota
Bacillus spizizenii TU-B-10 [CP002905]
95846
95920
+
Gly
GCC
[Ensembl]
¡û
>C121003275
CP002905
Bacillota
Bacillus spizizenii TU-B-10 [CP002905]
220938
221012
+
Gly
GCC
[Ensembl]
¡û
>C121003281
CP002905
Bacillota
Bacillus spizizenii TU-B-10 [CP002905]
281415
281489
+
Gly
GCC
[Ensembl]
¡û
>C121003313
CP002905
Bacillota
Bacillus spizizenii TU-B-10 [CP002905]
1064261
1064335
+
Gly
GCC
[Ensembl]
¡û
>C121003330
CP002905
Bacillota
Bacillus spizizenii TU-B-10 [CP002905]
3112338
3112264
-
Gly
GCC
[Ensembl]
¡û
>W121035368
AHLH01000018
Bacillota
Staphylococcus epidermidis VCU127 [AHLH]
39125
39199
+
Gly
GCC
[ENA]
¡û
>W121035391
AHLH01000073
Bacillota
Staphylococcus epidermidis VCU127 [AHLH]
7210
7136
-
Gly
GCC
[ENA]
¡û
>W121062813
AJJR01000017
Bacillota
Staphylococcus epidermidis subsp. aureus IS-250 [AJJR]
48680
48606
-
Gly
GCC
[ENA]
¡û
>W121062854
AJJR01000061
Bacillota
Staphylococcus epidermidis subsp. aureus IS-250 [AJJR]
39577
39651
+
Gly
GCC
[ENA]
¡û
>W121062865
AJJS01000008
Bacillota
Staphylococcus epidermidis subsp. aureus IS-K [AJJS]
338
412
+
Gly
GCC
[ENA]
¡û
>W121062908
AJJS01000047
Bacillota
Staphylococcus epidermidis subsp. aureus IS-K [AJJS]
944
870
-
Gly
GCC
[ENA]
¡û
>W121067453
AJTH01000027
Bacillota
Staphylococcus capitis QN1 [AJTH]
38578
38652
+
Gly
GCC
[ENA]
¡û
>W121067462
AJTH01000029
Bacillota
Staphylococcus capitis QN1 [AJTH]
786
712
-
Gly
GCC
[ENA]
¡û
>W121082261
AKGK01000056
Bacillota
Staphylococcus epidermidis NIHLM087 [AKGK]
833
907
+
Gly
GCC
[ENA]
¡û
>W121082301
AKGK01000064
Bacillota
Staphylococcus epidermidis NIHLM087 [AKGK]
39582
39656
+
Gly
GCC
[ENA]
¡û
>W121083789
AKHK01000018
Bacillota
Staphylococcus epidermidis NIH051668 [AKHK]
4168
4094
-
Gly
GCC
[ENA]
¡û
>W121083822
AKHK01000050
Bacillota
Staphylococcus epidermidis NIH051668 [AKHK]
39484
39558
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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