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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352197 (119 seq.)
>W1710859996
LMCN01000010
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
116813
116887
+
Thr
GGT
[ENA]
¡û
>W1710861272
LMDM01000008
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
256
182
-
Thr
GGT
[ENA]
¡û
>W1710868079
LMIU01000023
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
229
155
-
Thr
GGT
[ENA]
¡û
>W1710893643
LNEY01000032
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
181770
181844
+
Thr
GGT
[ENA]
¡û
>W1710946645
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
4753640
4753714
+
Thr
GGT
[ENA]
¡û
>W1711110774
LTVV01000181
Betaproteobacteria
Achromobacter xylosoxidans HMSC056C09 [LTVV]
257
183
-
Thr
GGT
[ENA]
¡û
>W1711148486
LVKM01000091
Betaproteobacteria
Achromobacter ruhlandii [LVKM]
132592
132666
+
Thr
GGT
[ENA]
¡û
>W1711148526
LVKN01000085
Betaproteobacteria
Achromobacter ruhlandii [LVKN]
106421
106347
-
Thr
GGT
[ENA]
¡û
>W1711148601
LVKP01000043
Betaproteobacteria
Achromobacter ruhlandii [LVKP]
44984
45058
+
Thr
GGT
[ENA]
¡û
>W1711254591
LYQL01000712
Betaproteobacteria
Achromobacter xylosoxidans [LYQL]
133444
133370
-
Thr
GGT
[ENA]
¡û
>W1711385345
MEEC01000082
Betaproteobacteria
Lautropia sp. SCN 70-15 [MEEC]
9353
9427
+
Thr
GGT
[ENA]
¡û
>W1711744365
MUHU01000033
Betaproteobacteria
Derxia lacustris [MUHU]
110546
110620
+
Thr
GGT
[ENA]
¡û
>W1711793358
MWLO01000124
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
18066
17992
-
Thr
GGT
[ENA]
¡û
>WENV180019391
FTBV01000851
[FTBV] metagenome; soil
53904
53978
+
Thr
GGT
[ENA]
¢þ
>WENV180025418
FTIP01002532
[FTIP] metagenome; soil
1554
1480
-
Thr
GGT
[ENA]
¢þ
>WENV180241009
OBDF01004770
[OBDF] human oral metagenome; human oral
515
589
+
Thr
GGT
[ENA]
¢þ
>WENV180249521
OBEQ010204761
[OBEQ] groundwater metagenome; groundwater
253
179
-
Thr
GGT
[ENA]
¢þ
>WENV180270420
OBEQ012168403
[OBEQ] groundwater metagenome; groundwater
351
277
-
Thr
GGT
[ENA]
¢þ
>WENV180297398
OBJA01028302
[OBJA] soil metagenome; sediment, water from around vicinity
638
712
+
Thr
GGT
[ENA]
¢þ
>WENV180692243
OCZS010423907
[OCZS] soil metagenome; soil
193
119
-
Thr
GGT
[ENA]
¢þ
>WENV180717553
ODGE01000044
[ODGE] human metagenome; G_DNA_Buccal mucosa
73413
73487
+
Thr
GGT
[ENA]
¢þ
>WENV180726016
ODGS01013834
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
210
284
+
Thr
GGT
[ENA]
¢þ
>WENV180728408
ODGU01047272
[ODGU] human metagenome; G_DNA_Supragingival plaque
1030
1104
+
Thr
GGT
[ENA]
¢þ
>WENV180733496
ODGZ01000128
[ODGZ] human metagenome; G_DNA_Supragingival plaque
30244
30318
+
Thr
GGT
[ENA]
¢þ
>WENV180735949
ODHB01002222
[ODHB] human metagenome; G_DNA_Supragingival plaque
5152
5226
+
Thr
GGT
[ENA]
¢þ
>WENV180739091
ODHD01005033
[ODHD] human metagenome; G_DNA_Supragingival plaque
2129
2055
-
Thr
GGT
[ENA]
¢þ
>WENV180755092
ODHU01014210
[ODHU] human metagenome; G_DNA_Supragingival plaque
884
958
+
Thr
GGT
[ENA]
¢þ
>WENV180774846
ODIJ01088817
[ODIJ] human metagenome; G_DNA_Tongue dorsum
182
256
+
Thr
GGT
[ENA]
¢þ
>WENV180796579
ODJB01007380
[ODJB] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV180801720
ODJD01123189
[ODJD] human metagenome; G_DNA_Supragingival plaque
57
131
+
Thr
GGT
[ENA]
¢þ
>WENV180865143
ODLI01028203
[ODLI] human metagenome; G_DNA_Buccal mucosa
111
185
+
Thr
GGT
[ENA]
¢þ
>WENV180924518
ODTK01006780
[ODTK] human metagenome; G_DNA_Supragingival plaque
3897
3971
+
Thr
GGT
[ENA]
¢þ
>WENV180927193
ODTM01000046
[ODTM] human metagenome; G_DNA_Supragingival plaque
59382
59456
+
Thr
GGT
[ENA]
¢þ
>WENV180940086
ODTX01219511
[ODTX] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV180965053
ODUO01116345
[ODUO] human metagenome; G_DNA_Supragingival plaque
235
161
-
Thr
GGT
[ENA]
¢þ
>WENV180972704
ODUW01000054
[ODUW] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV180998939
ODVT01003734
[ODVT] human metagenome; G_DNA_Buccal mucosa
5934
6008
+
Thr
GGT
[ENA]
¢þ
>WENV181010569
ODWH01066388
[ODWH] human metagenome; G_DNA_Buccal mucosa
103
29
-
Thr
GGT
[ENA]
¢þ
>WENV181029527
ODXF01000587
[ODXF] human metagenome; G_DNA_Supragingival plaque
14232
14306
+
Thr
GGT
[ENA]
¢þ
>WENV181066970
ODZI01004135
[ODZI] human metagenome; G_DNA_Supragingival plaque
5152
5226
+
Thr
GGT
[ENA]
¢þ
>WENV181090945
OEBC01007020
[OEBC] human metagenome; G_DNA_Supragingival plaque
3623
3697
+
Thr
GGT
[ENA]
¢þ
>WENV181107225
OEEI01003527
[OEEI] human metagenome; G_DNA_Supragingival plaque
239
165
-
Thr
GGT
[ENA]
¢þ
>WENV181135568
OEGG01041820
[OEGG] human metagenome; G_DNA_Tongue dorsum
150
224
+
Thr
GGT
[ENA]
¢þ
>WENV181146806
OEHQ01026749
[OEHQ] human metagenome; G_DNA_Supragingival plaque
99
25
-
Thr
GGT
[ENA]
¢þ
>WENV181179338
OEJT01003467
[OEJT] human metagenome; G_DNA_Supragingival plaque
5892
5966
+
Thr
GGT
[ENA]
¢þ
>WENV181180408
OEJU01000051
[OEJU] human metagenome; G_DNA_Supragingival plaque
62336
62410
+
Thr
GGT
[ENA]
¢þ
>WENV181187891
OEOE01001274
[OEOE] activated sludge metagenome; Activated Sludge
2248
2322
+
Thr
GGT
[ENA]
¢þ
>WENV181189184
OEOF01006388
[OEOF] activated sludge metagenome; Activated Sludge
1183
1109
-
Thr
GGT
[ENA]
¢þ
>WENV181294080
OFHG01071485
[OFHG] soil metagenome; Clay
510
584
+
Thr
GGT
[ENA]
¢þ
>WENV181294986
OFHH01087660
[OFHH] soil metagenome; Clay
90
164
+
Thr
GGT
[ENA]
¢þ
>WENV181385096
OFRI01033503
[OFRI] wastewater metagenome; Exp Tend VB 90WW
86
12
-
Thr
GGT
[ENA]
¢þ
>W141207233
AZND01000513
Betaproteobacteria
Methylibium sp. T29 [AZND]
128
54
-
Thr
GGT
[ENA]
¡û
>WENV183728019
PJTP01017393
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
463
537
+
Thr
GGT
[ENA]
¢þ
>WENV183733756
PJTY01022955
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
235
161
-
Thr
GGT
[ENA]
¢þ
>WENV183744541
PJUL01000007
[PJUL] feces metagenome; Chicken feces enriched on filter paper
254
180
-
Thr
GGT
[ENA]
¢þ
>WENV170553393
CXWK01016926
[CXWK] wastewater metagenome; activated sludge
3004
3078
+
Thr
GGT
[ENA]
¢þ
>WENV170557568
CXWL01030712
[CXWL] groundwater metagenome; biofilm material
288
214
-
Thr
GGT
[ENA]
¢þ
>WENV170561477
CZCA01010645
[CZCA] anaerobic digester metagenome; anaerobic digester
1423
1349
-
Thr
GGT
[ENA]
¢þ
>WENV170708524
LNAP01091038
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
185
111
-
Thr
GGT
[ENA]
¢þ
>WENV170710395
LNFM01001674
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
310
236
-
Thr
GGT
[ENA]
¢þ
>WENV170714413
LNFM01072435
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1968
1894
-
Thr
GGT
[ENA]
¢þ
>WENV170714749
LNFM01097603
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
310
384
+
Thr
GGT
[ENA]
¢þ
>WENV170784570
MCNE01001002
[MCNE] bioreactor metagenome; sewage enriched with benzalkonium chloride
1394
1468
+
Thr
GGT
[ENA]
¢þ
>WENV170965732
MTEV01001344
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
394
468
+
Thr
GGT
[ENA]
¢þ
>C181111267
CP025030
Betaproteobacteria
Achromobacter spanius DSM 23806 [CP025030]
1384573
1384647
+
Thr
GGT
-
¡û
>C191064754
CP029606
Betaproteobacteria
Methylibium sp. Pch-M [CP029606]
1513274
1513200
-
Thr
GGT
-
¡û
>C191084113
CP032084
Betaproteobacteria
Achromobacter sp. B7 [CP032084]
6189429
6189355
-
Thr
GGT
-
¡û
>C191208840
LR134361
Betaproteobacteria
Achromobacter insolitus NCTC13520 [LR134361]
6418737
6418663
-
Thr
GGT
-
¡û
>C191209567
LR134378
Betaproteobacteria
Lautropia mirabilis NCTC12852 [LR134378]
893859
893933
+
Thr
GGT
-
¡û
>W1911622517
PQSP01000011
Betaproteobacteria
Saezia sanguinis CNM695-12 [PQSP]
205
131
-
Thr
GGT
[ENA]
¡û
>W1810108860
PHGT01000014
Betaproteobacteria
Achromobacter xylosoxidans GAD3 [PHGT]
334
260
-
Thr
GGT
[ENA]
¡û
>SRA1002967
SRR002326.128769
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
159
85
-
Thr
GGT
[SRA]
>SRA1003147
SRR002326.243107
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
193
119
-
Thr
GGT
[SRA]
>SRA1003720
SRR002327.144374
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
186
260
+
Thr
GGT
[SRA]
>SRA1003731
SRR002327.148110
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
163
89
-
Thr
GGT
[SRA]
>SRA1003736
SRR002327.151820
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
128
202
+
Thr
GGT
[SRA]
>SRA1003772
SRR002327.174806
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
38
112
+
Thr
GGT
[SRA]
>W1810487678
QAYS01000024
Betaproteobacteria
Achromobacter mucicolens KCJK8006 [QAYS]
40748
40674
-
Thr
GGT
[ENA]
¡û
>W1810576247
QENF01000004
Betaproteobacteria
Achromobacter dolens 4530 [QENF]
106874
106948
+
Thr
GGT
[ENA]
¡û
>W1810576311
QENG01000012
Betaproteobacteria
Achromobacter insuavis 7393 [QENG]
79116
79190
+
Thr
GGT
[ENA]
¡û
>W1810624856
QHHO01000049
Betaproteobacteria
Achromobacter sp. RW408 [QHHO]
1279339
1279265
-
Thr
GGT
[ENA]
¡û
>ENV09001401
ABSR01005039
Freshwater sediment metagenome lwMethylamine_C1
863
937
+
Thr
GGT
[ENA]
¡û
>W1510019093
BBVB01000015
Betaproteobacteria
Bordetella bronchiseptica KU1201 [BBVB]
230
156
-
Thr
GGT
[ENA]
¡û
>W1511432405
JUGM01000015
Betaproteobacteria
Methylibium sp. CF059 [JUGM]
1287
1213
-
Thr
GGT
[ENA]
¡û
>W1511433177
JUHA01000002
Betaproteobacteria
Methylibium sp. YR605 [JUHA]
42526
42600
+
Thr
GGT
[ENA]
¡û
>W1511705374
LGRD01000018
Betaproteobacteria
Methylibium sp. NZG [LGRD]
290797
290723
-
Thr
GGT
[ENA]
¡û
>W1511705394
LGRD01000032
Betaproteobacteria
Methylibium sp. NZG [LGRD]
29161
29235
+
Thr
GGT
[ENA]
¡û
>W1511707483
LGVG01000015
Betaproteobacteria
Achromobacter spanius CGMCC9173 [LGVG]
601
527
-
Thr
GGT
[ENA]
¡û
>C161066160
CP014060
Betaproteobacteria
Achromobacter xylosoxidans FDAARGOS_147 [CP014060]
4307491
4307565
+
Thr
GGT
[Ensembl]
¡û
>W121019629
AGUF01000001
Betaproteobacteria
Achromobacter arsenitoxydans SY8 [AGUF]
129
55
-
Thr
GGT
[ENA]
¡û
>W1610077104
BCZG01000023
Betaproteobacteria
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [BCZG]
116029
116103
+
Thr
GGT
[ENA]
¡û
>W1610093447
CYSZ01000007
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608623 [CYSZ]
271836
271910
+
Thr
GGT
[ENA]
¡û
>W1610093695
CYTE01000004
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
1334
1260
-
Thr
GGT
[ENA]
¡û
>W1610093746
CYTF01000005
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
174421
174347
-
Thr
GGT
[ENA]
¡û
>W1610093865
CYTH01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608611 [CYTH]
24710
24636
-
Thr
GGT
[ENA]
¡û
>W1610093979
CYTJ01000017
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608618 [CYTJ]
289
215
-
Thr
GGT
[ENA]
¡û
>W1610094127
CYTM01000024
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
43649
43723
+
Thr
GGT
[ENA]
¡û
>W1610094385
CYTS01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
411751
411825
+
Thr
GGT
[ENA]
¡û
>W1610094702
CYTY01000030
Betaproteobacteria
Achromobacter sp. 2789STDY5608615 [CYTY]
86251
86325
+
Thr
GGT
[ENA]
¡û
>W1610094861
CYUB01000030
Betaproteobacteria
Achromobacter ruhlandii 2789STDY5608614 [CYUB]
81307
81381
+
Thr
GGT
[ENA]
¡û
>C131019690
HE798385
Betaproteobacteria
Achromobacter xylosoxidans NH44784-1996 [HE798385]
2409128
2409202
+
Thr
GGT
-
¡û
>W1610722342
LMCN01000010
Betaproteobacteria
Rhizobacter sp. Root29 [LMCN]
116813
116887
+
Thr
GGT
[ENA]
¡û
>W1610723618
LMDM01000008
Betaproteobacteria
Rhizobacter sp. Root1238 [LMDM]
256
182
-
Thr
GGT
[ENA]
¡û
>W1610730425
LMIU01000023
Betaproteobacteria
Achromobacter sp. Root83 [LMIU]
229
155
-
Thr
GGT
[ENA]
¡û
>W1610753909
LNEY01000032
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
181770
181844
+
Thr
GGT
[ENA]
¡û
>W1610802647
LOSD01000006
Betaproteobacteria
Achromobacter xylosoxidans [LOSD]
4753640
4753714
+
Thr
GGT
[ENA]
¡û
>W1610959217
LVKM01000091
Betaproteobacteria
Achromobacter ruhlandii [LVKM]
132592
132666
+
Thr
GGT
[ENA]
¡û
>W1610959257
LVKN01000085
Betaproteobacteria
Achromobacter ruhlandii [LVKN]
106421
106347
-
Thr
GGT
[ENA]
¡û
>W1610959332
LVKP01000043
Betaproteobacteria
Achromobacter ruhlandii [LVKP]
44984
45058
+
Thr
GGT
[ENA]
¡û
>W1710096655
CYSZ01000007
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608623 [CYSZ]
271836
271910
+
Thr
GGT
[ENA]
¡û
>W1710096738
CYTE01000004
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608612 [CYTE]
1334
1260
-
Thr
GGT
[ENA]
¡û
>W1710096789
CYTF01000005
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608624 [CYTF]
174421
174347
-
Thr
GGT
[ENA]
¡û
>W1710096908
CYTH01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608611 [CYTH]
24710
24636
-
Thr
GGT
[ENA]
¡û
>W1710097022
CYTJ01000017
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608618 [CYTJ]
289
215
-
Thr
GGT
[ENA]
¡û
>W1710097170
CYTM01000024
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608620 [CYTM]
43649
43723
+
Thr
GGT
[ENA]
¡û
>W1710097386
CYTS01000006
Betaproteobacteria
Achromobacter xylosoxidans 2789STDY5608619 [CYTS]
411751
411825
+
Thr
GGT
[ENA]
¡û
>W1710097662
CYTY01000030
Betaproteobacteria
Achromobacter sp. 2789STDY5608615 [CYTY]
86251
86325
+
Thr
GGT
[ENA]
¡û
>W1710097821
CYUB01000030
Betaproteobacteria
Achromobacter ruhlandii 2789STDY5608614 [CYUB]
81307
81381
+
Thr
GGT
[ENA]
¡û
>W1710592680
FRCQ01000024
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
696
622
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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