This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352223 (14 seq.)
>C171074574
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1041675
1041601
-
Val
GAC
-
¡û
>C171074626
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1050538
1050464
-
Val
GAC
-
¡û
>C171074678
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1050266
1050192
-
Val
GAC
-
¡û
>C171074730
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1046716
1046642
-
Val
GAC
-
¡û
>C171074782
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1050539
1050465
-
Val
GAC
-
¡û
>C171074834
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1041735
1041661
-
Val
GAC
-
¡û
>C009856
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1041729
1041655
-
Val
GAC
[Ensembl]
¡û
>WENV181312244
OFJB01061532
[OFJB] sludge metagenome; sludge
752
678
-
Val
GAC
[ENA]
¢þ
>WENV170710880
LNFM01002918
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3059
3130
+
Val
GAC
[ENA]
¢þ
>W141731643
JNJH01000033
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
35081
35007
-
Val
GAC
[ENA]
¡û
>C151004046
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1075127
1075053
-
Val
GAC
[Ensembl]
¡û
>C151004082
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2398053
2398127
+
Val
GAC
[Ensembl]
¡û
>C151004134
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2374146
2374220
+
Val
GAC
[Ensembl]
¡û
>W1710597375
FTNE01000001
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
304588
304662
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK