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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.352304 (71 seq.)
>W1710894067
LNFJ01000014
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
96243
96169
-
Arg
CCT
[ENA]
¡û
>W1711168258
LVXG01000015
Bacteroidota
Niastella yeongjuensis [LVXG]
18167
18095
-
Arg
CCT
[ENA]
¡û
>W1711171996
LWBP01000254
Bacteroidota
Niastella populi [LWBP]
316230
316304
+
Arg
CCT
[ENA]
¡û
>W1711503752
MKTW01000018
Bacteroidota
Sphingobacteriales bacterium 44-61 [MKTW]
2664
2592
-
Arg
CCT
[ENA]
¡û
>W1711584488
MNYN01000054
Bacteroidota
Flavobacteriaceae bacterium CG2_30_34_30 [MNYN]
12152
12226
+
Arg
CCT
[ENA]
¡û
>WENV180283484
OBID01000244
[OBID] metagenome; sludge
12091
12163
+
Arg
CCT
[ENA]
¢þ
>WENV180283730
OBID01002109
[OBID] metagenome; sludge
1040
1112
+
Arg
CCT
[ENA]
¢þ
>WENV181164384
OEIR01138159
[OEIR] soil metagenome; soil
125
53
-
Arg
CCT
[ENA]
¢þ
>WENV181170028
OEIV010020270
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
334
406
+
Arg
CCT
[ENA]
¢þ
>WENV181185864
OEMC01000354
[OEMC] metagenome; 1998
11007
10933
-
Arg
CCT
[ENA]
¢þ
>WENV181188245
OEOE01056486
[OEOE] activated sludge metagenome; Activated Sludge
219
145
-
Arg
CCT
[ENA]
¢þ
>WENV181188350
OEOE01095176
[OEOE] activated sludge metagenome; Activated Sludge
160
232
+
Arg
CCT
[ENA]
¢þ
>WENV181226838
OFDN01000152
[OFDN] hot springs metagenome; Water
13967
14039
+
Arg
CCT
[ENA]
¢þ
>WENV181402340
OFTY01000717
[OFTY] sludge metagenome; sludge
1605
1680
+
Arg
CCT
[ENA]
¢þ
>WENV181415096
OGCL01003984
[OGCL] hot springs metagenome; Hot spring water
6460
6532
+
Arg
CCT
[ENA]
¢þ
>WENV181839527
OGVO01002603
[OGVO] freshwater metagenome; freshwater
1469
1541
+
Arg
CCT
[ENA]
¢þ
>WENV181842081
OGVS01030976
[OGVS] freshwater metagenome; freshwater
303
231
-
Arg
CCT
[ENA]
¢þ
>WENV181842476
OGVT01002639
[OGVT] freshwater metagenome; freshwater
1631
1703
+
Arg
CCT
[ENA]
¢þ
>WENV181854358
OGWK01000676
[OGWK] freshwater metagenome; freshwater
1311
1383
+
Arg
CCT
[ENA]
¢þ
>WENV181858913
OGWP01049393
[OGWP] freshwater metagenome; freshwater
286
358
+
Arg
CCT
[ENA]
¢þ
>WENV182865943
OKRQ01007430
[OKRQ] freshwater metagenome; freshwater
941
869
-
Arg
CCT
[ENA]
¢þ
>WENV183092219
OLKW01000245
[OLKW] soil metagenome; soil
24930
25004
+
Arg
CCT
[ENA]
¢þ
>WENV170000165
AERA01018846
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
7117
7189
+
Arg
CCT
[ENA]
¢þ
>WENV170216223
CEPX01194327
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2875
2803
-
Arg
CCT
[ENA]
¢þ
>WENV170357208
CETJ01125471
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
473
401
-
Arg
CCT
[ENA]
¢þ
>WENV170365432
CETN01073956
[CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5956
5884
-
Arg
CCT
[ENA]
¢þ
>WENV170565749
FKKE01000443
[FKKE] freshwater metagenome; freshwater
11137
11211
+
Arg
CCT
[ENA]
¢þ
>WENV170652079
JRYG01072595
[JRYG] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
28
102
+
Arg
CCT
[ENA]
¢þ
>WENV170712960
LNFM01021198
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2040
1966
-
Arg
CCT
[ENA]
¢þ
>WENV170938986
MDTG01318086
[MDTG] marine metagenome; seawater
67791
67863
+
Arg
CCT
[ENA]
¢þ
>WENV170977658
MTKZ01028658
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5578
5652
+
Arg
CCT
[ENA]
¢þ
>WENV170980814
MWVT01001977
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
896
970
+
Arg
CCT
[ENA]
¢þ
>WENV170983260
MWVV01015968
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
1622
1696
+
Arg
CCT
[ENA]
¢þ
>WENV170983895
MWVV01115502
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
415
487
+
Arg
CCT
[ENA]
¢þ
>WENV170983966
MWVV01133413
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
506
432
-
Arg
CCT
[ENA]
¢þ
>WENV170985986
MWVX01010198
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
1669
1593
-
Arg
CCT
[ENA]
¢þ
>WENV170986551
MWVX01050904
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
154
79
-
Arg
CCT
[ENA]
¢þ
>WENV170986898
MWVX01094127
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
358
432
+
Arg
CCT
[ENA]
¢þ
>WENV170986961
MWVX01103638
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
325
401
+
Arg
CCT
[ENA]
¢þ
>WENV170986969
MWVX01104801
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
105
179
+
Arg
CCT
[ENA]
¢þ
>WENV170987521
MWVX01209144
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
475
549
+
Arg
CCT
[ENA]
¢þ
>WENV170987536
MWVX01211538
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
392
466
+
Arg
CCT
[ENA]
¢þ
>WENV170987586
MWVX01221386
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
387
461
+
Arg
CCT
[ENA]
¢þ
>WENV170987874
MWVX01300433
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
174
246
+
Arg
CCT
[ENA]
¢þ
>WENV170988658
MWVX01570309
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
55
129
+
Arg
CCT
[ENA]
¢þ
>WENV170988667
MWVX01574112
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
185
259
+
Arg
CCT
[ENA]
¢þ
>WENV170992104
MWWB01001451
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
5361
5287
-
Arg
CCT
[ENA]
¢þ
>WENV170992612
MWWB01054937
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
511
586
+
Arg
CCT
[ENA]
¢þ
>WENV170994659
MWWE01024534
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
801
876
+
Arg
CCT
[ENA]
¢þ
>WENV170995128
MWWE01171295
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
207
281
+
Arg
CCT
[ENA]
¢þ
>WENV170995356
MWWF01002033
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
417
343
-
Arg
CCT
[ENA]
¢þ
>WENV170995359
MWWF01002081
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1584
1656
+
Arg
CCT
[ENA]
¢þ
>WENV170995391
MWWF01003731
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
1487
1415
-
Arg
CCT
[ENA]
¢þ
>WENV170995472
MWWF01011483
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
109
35
-
Arg
CCT
[ENA]
¢þ
>WENV170995902
MWWF01087207
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
599
525
-
Arg
CCT
[ENA]
¢þ
>WENV170996008
MWWF01115669
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
306
232
-
Arg
CCT
[ENA]
¢þ
>WENV170996157
MWWF01161886
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
367
441
+
Arg
CCT
[ENA]
¢þ
>WENV170996904
MWWG01003897
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
1638
1564
-
Arg
CCT
[ENA]
¢þ
>WENV170997691
MWWH01000728
[MWWH] soil metagenome; MG3-2 sample; Antarctic (ecotone) soil
5388
5464
+
Arg
CCT
[ENA]
¢þ
>WENV170999253
MWWK01011285
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
137
62
-
Arg
CCT
[ENA]
¢þ
>WENV170999497
MWWK01072478
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
227
153
-
Arg
CCT
[ENA]
¢þ
>C181187340
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3364434
3364506
+
Arg
CCT
-
¡û
>C191175183
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
1511879
1511951
+
Arg
CCT
-
¡û
>C191189158
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
1553092
1553164
+
Arg
CCT
-
¡û
>W1810682103
QKTW01000002
Bacteroidota
Taibaiella soli R1-15 [QKTW]
76944
77016
+
Arg
CCT
[ENA]
¡û
>WENV11100523
AERA01018846
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
7117
7189
+
Arg
CCT
[ENA]
¡û
>W1511300709
JPHF01000003
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
554181
554253
+
Arg
CCT
[ENA]
¡û
>C121007531
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
7457507
7457435
-
Arg
CCT
[Ensembl]
¡û
>C131003290
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
1551396
1551468
+
Arg
CCT
[Ensembl]
¡û
>W1610754333
LNFJ01000014
Bacteroidota
Bacteroidia bacterium Ga0077558 [LNFJ]
96243
96169
-
Arg
CCT
[ENA]
¡û
>W1710547499
FOCZ01000017
Bacteroidota
Niastella yeongjuensis [FOCZ]
18469
18397
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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