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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353332 (34 seq.)
>W1711928334
NAEY01000152
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
115961
116036
+
Thr
CGT
[ENA]
¡û
>W1711928478
NAFB01000174
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
108007
108082
+
Thr
CGT
[ENA]
¡û
>W1711928529
NAFC01000167
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
177489
177564
+
Thr
CGT
[ENA]
¡û
>W1711928572
NAFD01000180
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
43869
43794
-
Thr
CGT
[ENA]
¡û
>W1711928665
NAFF01000099
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
109829
109904
+
Thr
CGT
[ENA]
¡û
>W1711928758
NAFH01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
133991
134066
+
Thr
CGT
[ENA]
¡û
>W1711928962
NAFL01000270
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
89779
89704
-
Thr
CGT
[ENA]
¡û
>C171064703
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
563571
563496
-
Thr
CGT
-
¡û
>W131167467
ARDH01000008
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
136856
136931
+
Thr
CGT
[ENA]
¡û
>W131228547
AUGA01000016
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
5140
5065
-
Thr
CGT
[ENA]
¡û
>W141150217
AXAF01000003
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
170822
170747
-
Thr
CGT
[ENA]
¡û
>W141169208
AXVP01000063
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
12729
12654
-
Thr
CGT
[ENA]
¡û
>W141220398
AZXU01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
1066324
1066399
+
Thr
CGT
[ENA]
¡û
>W141275934
JADK01000003
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
1396227
1396302
+
Thr
CGT
[ENA]
¡û
>WENV183627376
OOGL01001628
[OOGL] marine metagenome; sea ice
196
271
+
Thr
CGT
[ENA]
¢þ
>C181178136
CP029425
Alphaproteobacteria
Bradyrhizobium ottawaense OO99 [CP029425]
2469738
2469813
+
Thr
CGT
-
¡û
>C181178199
CP029426
Alphaproteobacteria
Bradyrhizobium amphicarpaeae 39S1MB [CP029426]
6945196
6945271
+
Thr
CGT
-
¡û
>C181178243
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
6648637
6648712
+
Thr
CGT
-
¡û
>W1910599057
LBJQ01000088
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
40204
40129
-
Thr
CGT
[ENA]
¡û
>W1911409822
NWTF01000002
Alphaproteobacteria
Bradyrhizobium ottawaense L2 [NWTF]
22392
22317
-
Thr
CGT
[ENA]
¡û
>W1810089644
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
5718943
5718868
-
Thr
CGT
[ENA]
¡û
>W1810400144
PYFW01000001
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
166044
165969
-
Thr
CGT
[ENA]
¡û
>W1511681456
LFIQ01000039
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
454991
455066
+
Thr
CGT
[ENA]
¡û
>C121000709
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
278048
278123
+
Thr
CGT
[Ensembl]
¡û
>C161107824
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
299021
299096
+
Thr
CGT
-
¡û
>C161107913
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
851338
851413
+
Thr
CGT
-
¡û
>W121036188
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
322657
322732
+
Thr
CGT
[ENA]
¡û
>W121036439
AHMB01000043
Alphaproteobacteria
Bradyrhizobium sp. WSM1253 [AHMB]
301328
301403
+
Thr
CGT
[ENA]
¡û
>W121065281
AJPX01000079
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
1470
1395
-
Thr
CGT
[ENA]
¡û
>W121065335
AJPY01000231
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
3001
3076
+
Thr
CGT
[ENA]
¡û
>W121065724
AJQG01000210
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 15615 [AJQG]
46048
45973
-
Thr
CGT
[ENA]
¡û
>W1610514632
FMAI01000021
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
133816
133891
+
Thr
CGT
[ENA]
¡û
>W1710500322
FMAI01000021
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
133816
133891
+
Thr
CGT
[ENA]
¡û
>W1710569828
FOUS01000015
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
168739
168664
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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