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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353342 (11 seq.)
>W131038844
AMGI01000004
Mycoplasmatota
Spiroplasma melliferum IPMB4A [AMGI]
16170
16096
-
Met
CAT
[ENA]
¡û
>C171021645
CP013197
Mycoplasmatota
Spiroplasma citri R8-A2 [CP013197]
1283082
1283008
-
Met
CAT
-
¡û
>C171065475
CP017658
Mycoplasmatota
Spiroplasma sp. TU-14 [CP017658]
967143
967069
-
Met
CAT
-
¡û
>C171071494
CP018022
Mycoplasmatota
Spiroplasma sp. NBRC 100390 [CP018022]
967125
967051
-
Met
CAT
-
¡û
>WENV181204577
OERZ01002077
[OERZ] metagenome; Caecal content
721
795
+
fMet
CAT
[ENA]
¢þ
>C181195171
CP031088
Mycoplasmatota
Spiroplasma phoeniceum P40 [CP031088]
1443524
1443450
-
Met
CAT
-
¡û
>C191063203
CP029202
Mycoplasmatota
Spiroplasma melliferum AS576 [CP029202]
1036780
1036706
-
Met
CAT
-
¡û
>W1810120000
PHSJ01000010
Mycoplasmatota
Spiroplasma melliferum CH-1 [PHSJ]
47349
47423
+
Met
CAT
[ENA]
¡û
>W1810339340
PUUH01000257
Mycoplasmatota
Spiroplasma sp. ChiS [PUUH]
3413
3339
-
Met
CAT
[ENA]
¡û
>C151074053
CP010899
Mycoplasmatota
Spiroplasma kunkelii CR2-3x [CP010899]
340585
340659
+
Met
CAT
-
¡û
>W121008362
AGBZ01000001
Mycoplasmatota
Spiroplasma melliferum KC3 [AGBZ]
181432
181358
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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