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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.353877 (75 seq.)
>W1710805123
LJZT01000035
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
2140
2211
+
Asn
GTT
[ENA]
¡û
>W1710882904
LMVE01000121
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
13347
13420
+
Asn
GTT
[ENA]
¡û
>W131036004
AJUB01000010
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
883634
883707
+
Asn
GTT
[ENA]
¡û
>W131036547
ALVW01000014
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
407747
407820
+
Asn
GTT
[ENA]
¡û
>W131089972
AOFE01000016
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
4436
4509
+
Asn
GTT
[ENA]
¡û
>W1711088593
LSZA01000077
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
2051
2122
+
Asn
GTT
[ENA]
¡û
>W1711116536
LUBZ01000020
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
24952
24879
-
Asn
GTT
[ENA]
¡û
>W1711120943
LUHJ01000075
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
2718
2791
+
Asn
GTT
[ENA]
¡û
>W1711261769
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2088089
2088162
+
Asn
GTT
[ENA]
¡û
>W1711335601
MBQX01000114
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
16813
16740
-
Asn
GTT
[ENA]
¡û
>W1711335617
MBQY01000023
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
63901
63828
-
Asn
GTT
[ENA]
¡û
>W1711666741
MRCF01000109
Cyanobacteriota
Scytonema sp. HK-05 [MRCF]
11289
11362
+
Asn
GTT
[ENA]
¡û
>W1711711344
MTAV01000161
Cyanobacteriota
Nostoc sp. T09 [MTAV]
15939
15866
-
Asn
GTT
[ENA]
¡û
>W1711711368
MTAW01000113
Cyanobacteriota
Nostoc sp. 106C [MTAW]
2349
2422
+
Asn
GTT
[ENA]
¡û
>C010302
BA000045
Cyanobacteriota
Gloeobacter violaceus PCC 7421 [BA000045]
2186745
2186674
-
Asn
GTT
[Ensembl]
¡û
>C025517
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1621556
1621627
+
Asn
GTT
[Ensembl]
¡û
>w021699
AAVW01000042
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
2502
2578
+
Asn
GTT
[ENA]
¡û
>WENV181234529
OFEU01000290
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
37040
36969
-
Asn
GTT
[ENA]
¢þ
>WENV181854078
OGWJ01009041
[OGWJ] freshwater metagenome; freshwater
558
485
-
Asn
GTT
[ENA]
¢þ
>WENV170954237
MJUF01004823
[MJUF] soil metagenome; viral particles from soil sample MG6
337
266
-
Asn
GTT
[ENA]
¢þ
>WENV171003120
NNBT01001485
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1547
1476
-
Asn
GTT
[ENA]
¢þ
>WENV171003428
NNBU01000012
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
110204
110133
-
Asn
GTT
[ENA]
¢þ
>WENV171003674
NNBV01000024
[NNBV] plant metagenome; symbiotic tissue sample KVS11
18320
18249
-
Asn
GTT
[ENA]
¢þ
>C181004803
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
1783509
1783438
-
Asn
GTT
-
¡û
>C181043616
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
1325729
1325802
+
Asn
GTT
-
¡û
>C181078416
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
6132729
6132802
+
Asn
GTT
-
¡û
>C181105235
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
5963728
5963799
+
Asn
GTT
-
¡û
>C181137800
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
2065634
2065705
+
Asn
GTT
-
¡û
>C191001205
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1499102
1499175
+
Asn
GTT
-
¡û
>C191001289
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
2559605
2559532
-
Asn
GTT
-
¡û
>C191085228
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2417893
2417820
-
Asn
GTT
-
¡û
>W1910008415
BDGE01000073
Cyanobacteriota
Nostoc cycadae WK-1 [BDGE]
123315
123242
-
Asn
GTT
[ENA]
¡û
>W1910175524
BJCE01000287
Cyanobacteriota
Sphaerospermopsis reniformis NIES-1949 [BJCE]
2674
2747
+
Asn
GTT
[ENA]
¡û
>W1910339385
FSSI01000085
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
5989
5918
-
Asn
GTT
[ENA]
¡û
>W1910339432
FSSI02000085
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
5989
5918
-
Asn
GTT
[ENA]
¡û
>C141007930
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
942792
942865
+
Asn
GTT
-
¡û
>W1910646655
LWSY01000143
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
86245
86174
-
Asn
GTT
[ENA]
¡û
>W1910805273
MTPU01000038
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
62639
62566
-
Asn
GTT
[ENA]
¡û
>W1910859292
NBYN01000055
Cyanobacteriota
Cylindrospermopsis raciborskii CENA303 [NBYN]
175461
175388
-
Asn
GTT
[ENA]
¡û
>W1910943175
NJHS01000029
Cyanobacteriota
Cylindrospermopsis raciborskii C07 [NJHS]
9734
9807
+
Asn
GTT
[ENA]
¡û
>W1910943210
NJHT01000016
Cyanobacteriota
Cylindrospermopsis raciborskii C04 [NJHT]
9740
9813
+
Asn
GTT
[ENA]
¡û
>W1910943255
NJHU01000034
Cyanobacteriota
Cylindrospermopsis raciborskii C03 [NJHU]
52121
52048
-
Asn
GTT
[ENA]
¡û
>W1910943302
NJHV01000415
Cyanobacteriota
Cylindrospermopsis raciborskii S14 [NJHV]
14040
14113
+
Asn
GTT
[ENA]
¡û
>W1910943344
NJHW01000271
Cyanobacteriota
Cylindrospermopsis raciborskii S10 [NJHW]
14057
14130
+
Asn
GTT
[ENA]
¡û
>W1910943388
NJHX01000257
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
68865
68938
+
Asn
GTT
[ENA]
¡û
>W1910943421
NJHY01000075
Cyanobacteriota
Cylindrospermopsis raciborskii S06 [NJHY]
27874
27947
+
Asn
GTT
[ENA]
¡û
>W1910943474
NJHZ01000377
Cyanobacteriota
Cylindrospermopsis raciborskii S05 [NJHZ]
14077
14150
+
Asn
GTT
[ENA]
¡û
>W1910943506
NJIA01000259
Cyanobacteriota
Cylindrospermopsis raciborskii S01 [NJIA]
14038
14111
+
Asn
GTT
[ENA]
¡û
>W1911118761
NOLJ01000010
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
56440
56369
-
Asn
GTT
[ENA]
¡û
>W1911153690
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1924183
1924256
+
Asn
GTT
[ENA]
¡û
>W1911244311
NSHF01000734
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
1234
1305
+
Asn
GTT
[ENA]
¡û
>W1911741926
QVFV01000001
Cyanobacteriota
Leptolyngbya sp. LK str. Lakshadweep [QVFV]
734342
734415
+
Asn
GTT
[ENA]
¡û
>W10106021
ACYA01000018
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
13091
13164
+
Asn
GTT
[ENA]
¡û
>W10106081
ACYB01000042
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
96900
96973
+
Asn
GTT
[ENA]
¡û
>W11108344
ACYA01000018
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
13091
13164
+
Asn
GTT
[ENA]
¡û
>W11108404
ACYB01000042
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
96900
96973
+
Asn
GTT
[ENA]
¡û
>W1511400828
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
238365
238438
+
Asn
GTT
[ENA]
¡û
>W1511401849
JTJD01000271
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
242809
242882
+
Asn
GTT
[ENA]
¡û
>W1511501707
JXCB01000004
Cyanobacteriota
Tolypothrix campylonemoides VB511288 [JXCB]
207347
207420
+
Asn
GTT
[ENA]
¡û
>C161005328
CP007203
Cyanobacteriota
Nodularia spumigena CCY9414 [CP007203]
1152399
1152472
+
Asn
GTT
[Ensembl]
¡û
>W1610003565
AGCR01000087
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
7636
7565
-
Asn
GTT
[ENA]
¡û
>W1610084880
CDHJ01000279
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
18015
17944
-
Asn
GTT
[ENA]
¡û
>C131004255
CP003552
Cyanobacteriota
Nostoc sp. PCC 7524 [CP003552]
539199
539272
+
Asn
GTT
[Ensembl]
¡û
>C131004459
CP003592
Cyanobacteriota
Pseudanabaena sp. PCC 7367 [CP003592]
742190
742119
-
Asn
GTT
[Ensembl]
¡û
>C131004495
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
1701829
1701758
-
Asn
GTT
[Ensembl]
¡û
>W1610668980
LJZT01000035
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
2140
2211
+
Asn
GTT
[ENA]
¡û
>W1610744830
LMVE01000121
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
13347
13420
+
Asn
GTT
[ENA]
¡û
>W1610923132
LSZA01000077
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
2051
2122
+
Asn
GTT
[ENA]
¡û
>W1610927778
LUBZ01000020
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
24952
24879
-
Asn
GTT
[ENA]
¡û
>W1610932180
LUHJ01000075
Cyanobacteriota
Anabaena sp. 4-3 [LUHJ]
2718
2791
+
Asn
GTT
[ENA]
¡û
>W1610979401
LWAJ01000183
Cyanobacteriota
Nodularia spumigena CENA596 [LWAJ]
1944
2017
+
Asn
GTT
[ENA]
¡û
>W1611023744
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2088089
2088162
+
Asn
GTT
[ENA]
¡û
>W1710004185
AGCR01000087
Cyanobacteriota
Tolypothrix sp. PCC 7601 [AGCR]
7636
7565
-
Asn
GTT
[ENA]
¡û
>W1710087967
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
1667382
1667455
+
Asn
GTT
[ENA]
¡û
>W1710089742
CDHJ01000279
Cyanobacteriota
Umezakia ovalisporum [CDHJ]
18015
17944
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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