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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354367 (81 seq.)
>W1711128582
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
88362
88436
+
Gln
TTG
[ENA]
¡û
>W1711128589
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
88954
89028
+
Gln
TTG
[ENA]
¡û
>W1711462043
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
3832
3758
-
Gln
TTG
[ENA]
¡û
>W1711462050
MJHL01000006
Bacillota
Clostridium baratii [MJHL]
3240
3166
-
Gln
TTG
[ENA]
¡û
>W1711462119
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
4059
3985
-
Gln
TTG
[ENA]
¡û
>W1711462126
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
3467
3393
-
Gln
TTG
[ENA]
¡û
>W1711462244
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
4024
3950
-
Gln
TTG
[ENA]
¡û
>W1711462251
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3432
3358
-
Gln
TTG
[ENA]
¡û
>C171030632
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1453127
1453053
-
Gln
TTG
-
¡û
>C171030639
CP014204
Bacillota
Clostridium baratii CDC51267 [CP014204]
1452535
1452461
-
Gln
TTG
-
¡û
>WENV180117595
OARK01026354
[OARK] human gut metagenome; ENVO:feces
125
51
-
Gln
TTG
[ENA]
¢þ
>WENV180150132
OAUM01025459
[OAUM] human gut metagenome; faeces
81
7
-
Gln
TTG
[ENA]
¢þ
>WENV180164813
OAVJ01016475
[OAVJ] human gut metagenome; faeces
856
782
-
Gln
TTG
[ENA]
¢þ
>WENV180168587
OAVR01003183
[OAVR] human gut metagenome; faeces
445
519
+
Gln
TTG
[ENA]
¢þ
>WENV180234514
OBCQ01137398
[OBCQ] human gut metagenome; human gut
126
52
-
Gln
TTG
[ENA]
¢þ
>WENV180337595
OBLG01066968
[OBLG] human gut metagenome; human gut
487
413
-
Gln
TTG
[ENA]
¢þ
>WENV180411951
OBUZ01007427
[OBUZ] human gut metagenome; faeces
863
789
-
Gln
TTG
[ENA]
¢þ
>WENV180440036
OBWU01003272
[OBWU] human gut metagenome; faeces
761
687
-
Gln
TTG
[ENA]
¢þ
>WENV180455651
OBXO01019368
[OBXO] human gut metagenome; faeces
248
322
+
Gln
TTG
[ENA]
¢þ
>WENV180456679
OBXR01003400
[OBXR] human gut metagenome; faeces
884
810
-
Gln
TTG
[ENA]
¢þ
>WENV180491693
OBZV01040616
[OBZV] human gut metagenome; faeces
103
29
-
Gln
TTG
[ENA]
¢þ
>WENV180513518
OCHA01070158
[OCHA] human gut metagenome; human gut
175
101
-
Gln
TTG
[ENA]
¢þ
>WENV180546598
OCIU01002481
[OCIU] human gut metagenome; human gut
10609
10535
-
Gln
TTG
[ENA]
¢þ
>WENV180568184
OCLM01059307
[OCLM] human gut metagenome; human gut
132
206
+
Gln
TTG
[ENA]
¢þ
>WENV180606750
OCPT01145723
[OCPT] human gut metagenome; human gut
41
115
+
Gln
TTG
[ENA]
¢þ
>WENV180626711
OCQM01047313
[OCQM] human gut metagenome; human gut
228
154
-
Gln
TTG
[ENA]
¢þ
>WENV180628150
OCQO01054499
[OCQO] human gut metagenome; human gut
81
155
+
Gln
TTG
[ENA]
¢þ
>WENV180629149
OCQP01041734
[OCQP] human gut metagenome; human gut
286
212
-
Gln
TTG
[ENA]
¢þ
>W141111831
AVSV01000011
Bacillota
Clostridium sp. Ade.TY [AVSV]
78780
78854
+
Gln
TTG
[ENA]
¡û
>WENV181417246
OGCM01000067
[OGCM] human gut metagenome; human gut
17942
17868
-
Gln
TTG
[ENA]
¢þ
>WENV181454660
OGED01020224
[OGED] metagenome; Human gut stool
587
513
-
Gln
TTG
[ENA]
¢þ
>WENV181502490
OGGI01043972
[OGGI] metagenome; Human gut stool
288
214
-
Gln
TTG
[ENA]
¢þ
>WENV181571877
OGJP01014948
[OGJP] metagenome; Human gut stool
270
196
-
Gln
TTG
[ENA]
¢þ
>WENV181592590
OGKR01023232
[OGKR] metagenome; Human gut stool
1049
975
-
Gln
TTG
[ENA]
¢þ
>WENV181626064
OGML01007127
[OGML] metagenome; Human gut stool
4808
4734
-
Gln
TTG
[ENA]
¢þ
>WENV181663391
OGOH01017111
[OGOH] human gut metagenome; faeces
195
269
+
Gln
TTG
[ENA]
¢þ
>WENV181749677
OGQO01108650
[OGQO] human gut metagenome; faeces
251
325
+
Gln
TTG
[ENA]
¢þ
>WENV181795000
OGRS01010133
[OGRS] human gut metagenome; faeces
740
666
-
Gln
TTG
[ENA]
¢þ
>WENV181800139
OGRY01015139
[OGRY] human gut metagenome; faeces
723
649
-
Gln
TTG
[ENA]
¢þ
>WENV182187835
OHOK01042170
[OHOK] human gut metagenome; feces
159
85
-
Gln
TTG
[ENA]
¢þ
>WENV182516330
OIWN01037280
[OIWN] human gut metagenome; faeces
240
166
-
Gln
TTG
[ENA]
¢þ
>W141265565
CCFI01000016
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
1686
1760
+
Gln
TTG
[ENA]
¡û
>W141265571
CCFI01000017
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
149
223
+
Gln
TTG
[ENA]
¡û
>W141267544
CCNP01000016
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
1686
1760
+
Gln
TTG
[ENA]
¡û
>W141267550
CCNP01000017
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
149
223
+
Gln
TTG
[ENA]
¡û
>WENV182762628
OJRN01034955
[OJRN] human gut metagenome; stool sample
442
368
-
Gln
TTG
[ENA]
¢þ
>WENV182763403
OJRO01007618
[OJRO] human gut metagenome; stool sample
1869
1943
+
Gln
TTG
[ENA]
¢þ
>WENV182794286
OJSP01006336
[OJSP] human gut metagenome; human gut
6030
5956
-
Gln
TTG
[ENA]
¢þ
>WENV182821882
OKBA01008578
[OKBA] human gut metagenome; human gut
460
386
-
Gln
TTG
[ENA]
¢þ
>WENV182860293
OKOR01003640
[OKOR] human gut metagenome; human gut
138
212
+
Gln
TTG
[ENA]
¢þ
>WENV182938450
OKVD01011176
[OKVD] human gut metagenome; human gut
242
316
+
Gln
TTG
[ENA]
¢þ
>WENV182950277
OKVR01001850
[OKVR] human gut metagenome; human gut
981
907
-
Gln
TTG
[ENA]
¢þ
>WENV182952066
OKVV01001717
[OKVV] human gut metagenome; human gut
2810
2884
+
Gln
TTG
[ENA]
¢þ
>WENV183087824
OLJO01002980
[OLJO] human gut metagenome; human gut
667
593
-
Gln
TTG
[ENA]
¢þ
>WENV183147008
OLOM01056816
[OLOM] human gut metagenome; faeces
220
294
+
Gln
TTG
[ENA]
¢þ
>WENV183160162
OLOU01068744
[OLOU] human gut metagenome; faeces
51
125
+
Gln
TTG
[ENA]
¢þ
>WENV183173395
OLPD01003543
[OLPD] human gut metagenome; faeces
148
222
+
Gln
TTG
[ENA]
¢þ
>WENV183191807
OLPR01030049
[OLPR] human gut metagenome; faeces
131
57
-
Gln
TTG
[ENA]
¢þ
>WENV183578886
OOCL01040662
[OOCL] human gut metagenome; human gut
420
494
+
Gln
TTG
[ENA]
¢þ
>WENV183581381
OOCN01034017
[OOCN] human gut metagenome; human gut
374
448
+
Gln
TTG
[ENA]
¢þ
>WENV183594547
OODB01056818
[OODB] human gut metagenome; human gut
326
252
-
Gln
TTG
[ENA]
¢þ
>W09133508
ACPD01000159
Bacillota
Clostridium cellulovorans 743B [ACPD]
168
242
+
Gln
TTG
[ENA]
¡û
>W1810367621
PVXQ01000044
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
22235
22309
+
Gln
TTG
[ENA]
¡û
>W1810367640
PVXQ01000080
Bacillota
Clostridium vincentii DSM 10228 [PVXQ]
375
449
+
Gln
TTG
[ENA]
¡û
>C151014208
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1629185
1629259
+
Gln
TTG
[Ensembl]
¡û
>C151014214
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1629776
1629850
+
Gln
TTG
[Ensembl]
¡û
>C10102765
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
1696028
1696102
+
Gln
TTG
[Ensembl]
¡û
>C10102775
CP002160
Bacillota
Clostridium cellulovorans 743B [CP002160]
1697002
1697076
+
Gln
TTG
[Ensembl]
¡û
>W11184333
BABR01000371
Bacillota
Clostridium cellulovorans 743B [BABR]
91
165
+
Gln
TTG
[ENA]
¡û
>W1610103140
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18456
18382
-
Gln
TTG
[ENA]
¡û
>W1610103147
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
17866
17792
-
Gln
TTG
[ENA]
¡û
>W1610104230
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167899
167973
+
Gln
TTG
[ENA]
¡û
>W1610104259
CZBO01000029
Bacillota
Clostridium baratii [CZBO]
343
269
-
Gln
TTG
[ENA]
¡û
>W1610616839
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
89267
89341
+
Gln
TTG
[ENA]
¡û
>W1610616845
LGRR01000018
Bacillota
Clostridium baratii [LGRR]
162
236
+
Gln
TTG
[ENA]
¡û
>W1710105895
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
18456
18382
-
Gln
TTG
[ENA]
¡û
>W1710105902
CZAV01000004
Bacillota
Clostridium baratii [CZAV]
17866
17792
-
Gln
TTG
[ENA]
¡û
>W1710106934
CZBO01000006
Bacillota
Clostridium baratii [CZBO]
167899
167973
+
Gln
TTG
[ENA]
¡û
>W1710106963
CZBO01000029
Bacillota
Clostridium baratii [CZBO]
343
269
-
Gln
TTG
[ENA]
¡û
>W1710742178
LGRR01000017
Bacillota
Clostridium baratii [LGRR]
89267
89341
+
Gln
TTG
[ENA]
¡û
>W1710742184
LGRR01000018
Bacillota
Clostridium baratii [LGRR]
162
236
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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