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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354371 (44 seq.)
>C171098316
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2969844
2969919
+
Val
TAC
-
¡û
>C171098319
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2970240
2970315
+
Val
TAC
-
¡û
>C171098331
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2600144
2600069
-
Val
TAC
-
¡û
>W131163708
AQZZ01000001
Bacillota
Succinispira mobilis DSM 6222 [AQZZ]
10789
10714
-
Val
TAC
[ENA]
¡û
>W131163731
AQZZ01000002
Bacillota
Succinispira mobilis DSM 6222 [AQZZ]
1543014
1542939
-
Val
TAC
[ENA]
¡û
>W131231401
AUIL01000011
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
160407
160332
-
Val
TAC
[ENA]
¡û
>W131231460
AUIL01000060
Bacillota
Sporomusa ovata DSM 2662 [AUIL]
14700
14625
-
Val
TAC
[ENA]
¡û
>W131242967
CAOS01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
246371
246296
-
Val
TAC
[ENA]
¡û
>W131242969
CAOS01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
246089
246014
-
Val
TAC
[ENA]
¡û
>W131242999
CAOS01000013
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
280113
280188
+
Val
TAC
[ENA]
¡û
>WENV180315046
OBKH01008510
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
217
292
+
Val
TAC
[ENA]
¢þ
>WENV181231453
OFEK01028567
[OFEK] activated sludge metagenome; Anaerobic digester
531
606
+
Val
TAC
[ENA]
¢þ
>WENV183673244
ORJL011259091
[ORJL] groundwater metagenome; groundwater
453
378
-
Val
TAC
[ENA]
¢þ
>WENV170658777
JUEG02000561
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
18039
17964
-
Val
TAC
[ENA]
¢þ
>WENV170660119
JXWT01003927
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
405
330
-
Val
TAC
[ENA]
¢þ
>W09105159
AAOP01000012
Bacillota
Desulforamulus reducens MI-1 [AAOP]
320
395
+
Val
TAC
[ENA]
¡û
>W09105187
AAOP01000072
Bacillota
Desulforamulus reducens MI-1 [AAOP]
8412
8337
-
Val
TAC
[ENA]
¡û
>W1910004751
AWQQ01000036
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
8945
9020
+
Val
TAC
[ENA]
¡û
>W1910004782
AWQQ01000080
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
15810
15885
+
Val
TAC
[ENA]
¡û
>W1910004785
AWQQ01000080
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
15241
15166
-
Val
TAC
[ENA]
¡û
>W1910004804
AWQQ01000162
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
2506
2581
+
Val
TAC
[ENA]
¡û
>W1910004963
AWVY01000035
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
31412
31487
+
Val
TAC
[ENA]
¡û
>W1910004978
AWVY01000048
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
58608
58683
+
Val
TAC
[ENA]
¡û
>W1910638963
LSLK01000036
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
8108
8033
-
Val
TAC
[ENA]
¡û
>W1910638973
LSLK01000044
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
26145
26070
-
Val
TAC
[ENA]
¡û
>W1910639001
LSLK01000073
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
66787
66712
-
Val
TAC
[ENA]
¡û
>W1910639050
LSLK01000157
Bacillota
Sporomusa silvacetica DSM 10669 [LSLK]
1467
1392
-
Val
TAC
[ENA]
¡û
>C151016328
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2175010
2174935
-
Val
TAC
[Ensembl]
¡û
>C151016342
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2173253
2173178
-
Val
TAC
[Ensembl]
¡û
>W1510586054
CTRP01000002
Bacillota
Sporomusa ovata An4 [CTRP]
160127
160052
-
Val
TAC
[ENA]
¡û
>W1510586073
CTRP01000006
Bacillota
Sporomusa ovata An4 [CTRP]
55776
55851
+
Val
TAC
[ENA]
¡û
>W1511564295
LADP01000033
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
48847
48922
+
Val
TAC
[ENA]
¡û
>W11181415
AGJB01000019
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
82
7
-
Val
TAC
[ENA]
¡û
>W11181425
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1733
1658
-
Val
TAC
[ENA]
¡û
>W121010357
AGJE01000013
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
83394
83319
-
Val
TAC
[ENA]
¡û
>W121010367
AGJE01000018
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
2185
2260
+
Val
TAC
[ENA]
¡û
>W121010388
AGJE01000034
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [AGJE]
9352
9427
+
Val
TAC
[ENA]
¡û
>W121101505
AKVJ01000006
Bacillota
Pelosinus fermentans B4 [AKVJ]
36889
36814
-
Val
TAC
[ENA]
¡û
>W121101747
AKVO01000024
Bacillota
Pelosinus fermentans JBW45 [AKVO]
11577
11502
-
Val
TAC
[ENA]
¡û
>C131003217
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
113605
113680
+
Val
TAC
[Ensembl]
¡û
>C131003232
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1739488
1739563
+
Val
TAC
[Ensembl]
¡û
>C131003248
CP003344
Bacillota
Desulfitobacterium dichloroeliminans LMG P-21439 [CP003344]
1804950
1805025
+
Val
TAC
[Ensembl]
¡û
>W1710526270
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
1745869
1745944
+
Val
TAC
[ENA]
¡û
>W1710568605
FOTS01000064
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
24500
24425
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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