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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.354545 (94 seq.)
>W1710784539
LJGZ01000091
Actinomycetota
Streptomyces nanshensis [LJGZ]
160815
160887
+
Arg
CCG
[ENA]
¡û
>W1710864309
LMFT01000032
Actinomycetota
Streptomyces sp. Root55 [LMFT]
413624
413552
-
Arg
CCG
[ENA]
¡û
>W1710996464
LQBL01000022
Actinomycetota
Serinicoccus chungangensis [LQBL]
164615
164687
+
Arg
CCG
[ENA]
¡û
>W1711187480
LWPN01000074
Actinomycetota
Kytococcus sp. HMSC28H12 [LWPN]
1803
1875
+
Arg
CCG
[ENA]
¡û
>W1711284253
LZRD01000026
Actinomycetota
Streptomyces sp. PTY087I2 [LZRD]
27784
27710
-
Arg
CCG
[ENA]
¡û
>W1711352778
MDDL01000205
Actinomycetota
Streptomyces griseus subsp. griseus [MDDL]
4110
4036
-
Arg
CCG
[ENA]
¡û
>W1711391484
MELP01000019
Actinomycetota
Actinobacteria bacterium RBG_16_67_15 [MELP]
18949
19021
+
Arg
CCG
[ENA]
¡û
>W1711455680
MJAF01000053
Actinomycetota
Streptomyces sp. EN16 [MJAF]
16165
16093
-
Arg
CCG
[ENA]
¡û
>W1711455746
MJAG01000035
Actinomycetota
Streptomyces sp. EN27 [MJAG]
58877
58949
+
Arg
CCG
[ENA]
¡û
>W1711502617
MKSW01000003
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
152397
152323
-
Arg
CCG
[ENA]
¡û
>W1711724833
MTQN01000010
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
1138451
1138379
-
Arg
CCG
[ENA]
¡û
>W1711926228
NACZ01000957
Actinomycetota
Streptomyces sp. BF-3 [NACZ]
223
295
+
Arg
CCG
[ENA]
¡û
>W1712017926
NEVF01000010
Actinomycetota
Streptomyces sp. CS057 [NEVF]
316834
316906
+
Arg
CCG
[ENA]
¡û
>C171007403
CP010833
Actinomycetota
Streptomyces sp. Tue 6075 Tue6075 [CP010833]
2346739
2346811
+
Arg
CCG
-
¡û
>C171034656
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
1400081
1400153
+
Arg
CCG
-
¡û
>W131217156
ATWM01000003
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
306986
307058
+
Arg
CCG
[ENA]
¡û
>W131181685
ARPI01000001
Actinomycetota
Streptomyces sp. DvalAA-83 [ARPI]
425470
425542
+
Arg
CCG
[ENA]
¡û
>WENV180041428
LLBZ010130055
[LLBZ] soil metagenome; soil from tomato rhizosphere
227
154
-
Arg
CCG
[ENA]
¢þ
>WENV180292869
OBIV01677918
[OBIV] soil metagenome; Clay
189
261
+
Arg
CCG
[ENA]
¢þ
>WENV180693361
OCZS011181828
[OCZS] soil metagenome; soil
243
170
-
Arg
CCG
[ENA]
¢þ
>WENV180846533
ODKT01013885
[ODKT] human metagenome; G_DNA_Supragingival plaque
643
571
-
Arg
CCG
[ENA]
¢þ
>WENV181156536
OEIE01027526
[OEIE] human metagenome; G_DNA_Supragingival plaque
324
396
+
Arg
CCG
[ENA]
¢þ
>WENV181401546
OFTX01000810
[OFTX] sludge metagenome; sludge
1492
1419
-
Arg
CCG
[ENA]
¢þ
>WENV181402734
OFTY01031050
[OFTY] sludge metagenome; sludge
104
177
+
Arg
CCG
[ENA]
¢þ
>WENV181407446
OGCG01027669
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
690
762
+
Arg
CCG
[ENA]
¢þ
>W141142642
AWQW01000086
Actinomycetota
Streptomyces niveus NCIMB 11891 [AWQW]
7965
8037
+
Arg
CCG
[ENA]
¡û
>W141216149
AZUQ01000001
Actinomycetota
Haloglycomyces albus DSM 45210 [AZUQ]
678843
678769
-
Arg
CCG
[ENA]
¡û
>W141216865
AZVF01000001
Actinomycetota
Streptomyces sp. KhCrAH-337 [AZVF]
431687
431759
+
Arg
CCG
[ENA]
¡û
>WENV183711943
PDWI01084344
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
787
861
+
Arg
CCG
[ENA]
¢þ
>WENV170013594
AUZY01003841
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
211
139
-
Arg
CCG
[ENA]
¢þ
>WENV170773900
LXNJ01015884
[LXNJ] sponge metagenome; marine sponge reef
1524
1450
-
Arg
CCG
[ENA]
¢þ
>C181229758
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
1140963
1141035
+
Arg
CCG
-
¡û
>C191091611
CP032543
Actinomycetota
Streptomyces griseus subsp. griseus ATCC 13273 [CP032543]
5225196
5225124
-
Arg
CCG
-
¡û
>W141734653
JNLT01000003
Actinomycetota
Streptomyces sp. CNS654 [JNLT]
38854
38926
+
Arg
CCG
[ENA]
¡û
>W141757443
JNXW01002592
Actinomycetota
Streptomyces californicus [JNXW]
1239
1167
-
Arg
CCG
[ENA]
¡û
>W141760341
JNZZ01000003
Actinomycetota
Streptomyces californicus [JNZZ]
145080
145152
+
Arg
CCG
[ENA]
¡û
>W141760547
JOAC01000008
Actinomycetota
Streptomyces californicus floridae [JOAC]
94668
94740
+
Arg
CCG
[ENA]
¡û
>W141761844
JOAZ01000017
Actinomycetota
Streptomyces halstedii [JOAZ]
409520
409448
-
Arg
CCG
[ENA]
¡û
>W141764472
JOCS01000403
Actinomycetota
Streptomyces sp. NRRL WC-3549 [JOCS]
1636
1708
+
Arg
CCG
[ENA]
¡û
>W141764690
JOCW01000015
Actinomycetota
Streptomyces sp. NRRL WC-3540 [JOCW]
170158
170230
+
Arg
CCG
[ENA]
¡û
>W141768384
JOFE01000019
Actinomycetota
Streptomyces griseus subsp. rhodochrous [JOFE]
150881
150953
+
Arg
CCG
[ENA]
¡û
>W141769889
JOGC01001385
Actinomycetota
Streptomyces sp. NRRL S-525 [JOGC]
852
924
+
Arg
CCG
[ENA]
¡û
>W141773581
JOIO01000009
Actinomycetota
Streptomyces sp. NRRL F-3273 [JOIO]
227681
227609
-
Arg
CCG
[ENA]
¡û
>W141811077
JPWW01000002
Actinomycetota
Streptomyces sp. JS01 [JPWW]
1715743
1715671
-
Arg
CCG
[ENA]
¡û
>C09100434
CP001631
Actinomycetota
Acidimicrobium ferrooxidans DSM 10331 [CP001631]
1900921
1900995
+
Arg
CCG
[Ensembl]
¡û
>W1910890160
NEUE01000238
Actinomycetota
Streptomyces sp. SM11 [NEUE]
40870
40798
-
Arg
CCG
[ENA]
¡û
>W1910890262
NEUG01000316
Actinomycetota
Streptomyces sp. SM5 [NEUG]
22367
22295
-
Arg
CCG
[ENA]
¡û
>W1911279552
NTGN01000256
Actinomycetota
Streptomyces sp. wa1071 [NTGN]
666
738
+
Arg
CCG
[ENA]
¡û
>W1911279762
NTGQ01000105
Actinomycetota
Streptomyces sp. t99 [NTGQ]
24057
23985
-
Arg
CCG
[ENA]
¡û
>W1911279826
NTGR01000142
Actinomycetota
Streptomyces sp. st170 [NTGR]
10070
9997
-
Arg
CCG
[ENA]
¡û
>W1911279891
NTGS01000146
Actinomycetota
Streptomyces sp. st140 [NTGS]
8244
8316
+
Arg
CCG
[ENA]
¡û
>W1911280007
NTGU01000047
Actinomycetota
Streptomyces sp. st77 [NTGU]
42204
42276
+
Arg
CCG
[ENA]
¡û
>W1911280078
NTGV01000091
Actinomycetota
Streptomyces sp. sk226 [NTGV]
31623
31695
+
Arg
CCG
[ENA]
¡û
>W1911280147
NTGW01000169
Actinomycetota
Streptomyces sp. rh207 [NTGW]
675
747
+
Arg
CCG
[ENA]
¡û
>W1911280183
NTGX01000033
Actinomycetota
Streptomyces sp. rh206 [NTGX]
6745
6673
-
Arg
CCG
[ENA]
¡û
>W1911280388
NTHA01000017
Actinomycetota
Streptomyces sp. or20 [NTHA]
29654
29582
-
Arg
CCG
[ENA]
¡û
>W1911280662
NTHE01000022
Actinomycetota
Streptomyces sp. man185 [NTHE]
63416
63344
-
Arg
CCG
[ENA]
¡û
>W1911280814
NTHG01000048
Actinomycetota
Streptomyces sp. f150 [NTHG]
45024
45096
+
Arg
CCG
[ENA]
¡û
>W1911412317
NWVL01000018
Actinomycetota
Streptomyces sp. WZ.A104 [NWVL]
35533
35605
+
Arg
CCG
[ENA]
¡û
>W1911491990
OAOR01000004
Actinomycetota
Streptomyces microflavus CG 893 [OAOR]
261706
261778
+
Arg
CCG
[ENA]
¡û
>W1810189350
PKIZ01000002
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
61092
61164
+
Arg
CCG
[ENA]
¡û
>W1810296772
PTJS01000001
Actinomycetota
Streptomyces sp. QL37 [PTJS]
5653891
5653819
-
Arg
CCG
[ENA]
¡û
>W1810500086
QBIA01000030
Actinomycetota
Streptomyces sp. CS147 [QBIA]
82566
82494
-
Arg
CCG
[ENA]
¡û
>W1810682566
QKUG01000003
Actinomycetota
Streptomyces sp. ScaeMP-e122 [QKUG]
384295
384223
-
Arg
CCG
[ENA]
¡û
>W1810695126
QLNH01002371
Actinomycetota
Streptomyces cavourensis YBQ59 [QLNH]
588
660
+
Arg
CCG
[ENA]
¡û
>W1810779154
QQNA01000316
Actinomycetota
Streptomyces corynorhini AC230 [QQNA]
16711
16784
+
Arg
CCG
[ENA]
¡û
>W1810917946
QWFA01000008
Actinomycetota
Streptomyces globisporus 1912-4Crt [QWFA]
47349
47421
+
Arg
CCG
[ENA]
¡û
>C151083903
CP011522
Actinomycetota
Streptomyces sp. CFMR 7 CFMR-7 [CP011522]
2731786
2731858
+
Arg
CCG
-
¡û
>W10107411
ACZH01000022
Actinomycetota
Streptomyces pratensis ATCC 33331 [ACZH]
85998
86070
+
Arg
CCG
[ENA]
¡û
>W10112546
ADFC01000024
Actinomycetota
Streptomyces sp. ACT-1 XylebKG-1 [ADFC]
34194
34120
-
Arg
CCG
[ENA]
¡û
>C10107957
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
5470475
5470547
+
Arg
CCG
[Ensembl]
¡û
>W11109699
ACZH01000022
Actinomycetota
Streptomyces pratensis ATCC 33331 [ACZH]
85998
86070
+
Arg
CCG
[ENA]
¡û
>W11115727
ADFC02000001
Actinomycetota
Streptomyces sp. ACT-1 XylebKG-1 [ADFC]
2785312
2785386
+
Arg
CCG
[ENA]
¡û
>W1511309753
JPPV01000119
Actinomycetota
Streptomyces europaeiscabiei NCPPB 4064 [JPPV]
95188
95260
+
Arg
CCG
[ENA]
¡û
>C11120484
CP002475
Actinomycetota
Streptomyces pratensis [CP002475]
2401585
2401657
+
Arg
CCG
[Ensembl]
¡û
>W1511401617
JTIY01000001
Actinomycetota
Streptomyces sp. AcH 505 [JTIY]
857532
857460
-
Arg
CCG
[ENA]
¡û
>W121018154
AGSW01000051
Actinomycetota
Streptomyces sp. W007 [AGSW]
54753
54681
-
Arg
CCG
[ENA]
¡û
>W121068414
AJUO01000075
Actinomycetota
Streptomyces globisporus C-1027 [AJUO]
11600
11674
+
Arg
CCG
[ENA]
¡û
>W1610615176
LGKJ01000090
Actinomycetota
Streptomyces sp. NRRL S-4 [LGKJ]
117969
118041
+
Arg
CCG
[ENA]
¡û
>W1610726655
LMFT01000032
Actinomycetota
Streptomyces sp. Root55 [LMFT]
413624
413552
-
Arg
CCG
[ENA]
¡û
>W1610851121
LQBL01000022
Actinomycetota
Serinicoccus chungangensis [LQBL]
164615
164687
+
Arg
CCG
[ENA]
¡û
>W1611042153
LZRD01000026
Actinomycetota
Streptomyces sp. PTY087I2 [LZRD]
27784
27710
-
Arg
CCG
[ENA]
¡û
>W1710082617
BDHJ01000008
Actinomycetota
Streptomyces sp. NBRC 110465 [BDHJ]
460190
460262
+
Arg
CCG
[ENA]
¡û
>W1710502610
FMCO01000396
Actinomycetota
Streptomyces sp. Termitarium-T10T-6 [FMCO]
1466
1538
+
Arg
CCG
[ENA]
¡û
>W1710502650
FMCP01000277
Actinomycetota
Streptomyces sp. OspMP-M43 [FMCP]
3034
2960
-
Arg
CCG
[ENA]
¡û
>W1710503824
FMHK01000018
Actinomycetota
Streptomyces sp. LamerLS-316 Streptomyces [FMHK]
257848
257920
+
Arg
CCG
[ENA]
¡û
>W1710503969
FMHN01000001
Actinomycetota
Streptomyces sp. ScaeMP-e48 Streptomyces [FMHN]
491670
491742
+
Arg
CCG
[ENA]
¡û
>W1710504043
FMHO01000002
Actinomycetota
Streptomyces sp. AmelKG-D3 Streptomyces [FMHO]
279771
279843
+
Arg
CCG
[ENA]
¡û
>W1710537506
FNTW01000001
Actinomycetota
Streptomyces griseus [FNTW]
77191
77117
-
Arg
CCG
[ENA]
¡û
>W1710609993
FYEJ01000001
Actinomycetota
Streptomyces sp. PgraA7 [FYEJ]
504874
504946
+
Arg
CCG
[ENA]
¡û
>W1710736422
LGKJ01000090
Actinomycetota
Streptomyces sp. NRRL S-4 [LGKJ]
117969
118041
+
Arg
CCG
[ENA]
¡û
>W1710765862
LIPE01000001
Actinomycetota
Streptomyces sp. TSRI0395 [LIPE]
499688
499760
+
Arg
CCG
[ENA]
¡û
>W1710772834
LIVO01000010
Actinomycetota
Streptomyces sp. CB02488 [LIVO]
93907
93979
+
Arg
CCG
[ENA]
¡û
>W1710773934
LIXK01000001
Actinomycetota
Streptomyces sp. CB02130 [LIXK]
1090050
1089976
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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