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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355046 (19 seq.)
>WENV180695095
OCZS013025529
[OCZS] soil metagenome; soil
62
138
+
fMet
CAT
[ENA]
¢þ
>WENV170955569
MJUJ01110164
[MJUJ] soil metagenome; viral particles from soil sample CN
97
170
+
Met
CAT
[ENA]
¢þ
>W121017662
AGRX01000104
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
294666
294738
+
Met
CAT
[ENA]
¡û
>W121017663
AGRX01000104
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
295061
295133
+
Met
CAT
[ENA]
¡û
>W121017664
AGRX01000104
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
295461
295533
+
Met
CAT
[ENA]
¡û
>W121017665
AGRX01000104
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
295851
295923
+
Met
CAT
[ENA]
¡û
>W121017666
AGRX01000104
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AGRX]
296248
296320
+
Met
CAT
[ENA]
¡û
>W121044515
AHZQ01000098
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AHZQ]
16292
16220
-
Met
CAT
[ENA]
¡û
>W121044516
AHZQ01000101
Planctomycetota
Singulisphaera acidiphila DSM 18658 [AHZQ]
108
36
-
Met
CAT
[ENA]
¡û
>C131003511
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
4474813
4474885
+
Met
CAT
[Ensembl]
¡û
>C131003512
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
4475208
4475280
+
Met
CAT
[Ensembl]
¡û
>C131003513
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
4475608
4475680
+
Met
CAT
[Ensembl]
¡û
>C131003514
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
4475998
4476070
+
Met
CAT
[Ensembl]
¡û
>C131003515
CP003364
Planctomycetota
Singulisphaera acidiphila DSM 18658 [CP003364]
4476395
4476467
+
Met
CAT
[Ensembl]
¡û
>W1710594192
FSRB01000002
Planctomycetota
Singulisphaera sp. GP187 [FSRB]
503052
502980
-
Met
CAT
[ENA]
¡û
>W1710594193
FSRB01000002
Planctomycetota
Singulisphaera sp. GP187 [FSRB]
502439
502367
-
Met
CAT
[ENA]
¡û
>W1710594194
FSRB01000002
Planctomycetota
Singulisphaera sp. GP187 [FSRB]
501999
501927
-
Met
CAT
[ENA]
¡û
>W1710594195
FSRB01000002
Planctomycetota
Singulisphaera sp. GP187 [FSRB]
501406
501334
-
Met
CAT
[ENA]
¡û
>W1710594196
FSRB01000002
Planctomycetota
Singulisphaera sp. GP187 [FSRB]
500882
500810
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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