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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.355816 (35 seq.)
>W1711345250
MCNR01000012
Bacillota
Ligilactobacillus animalis [MCNR]
1351
1277
-
Ala
TGC
[ENA]
¡û
>W1711345252
MCNR01000013
Bacillota
Ligilactobacillus animalis [MCNR]
626
700
+
Ala
TGC
[ENA]
¡û
>W1711345254
MCNR01000014
Bacillota
Ligilactobacillus animalis [MCNR]
485
411
-
Ala
TGC
[ENA]
¡û
>W1711345256
MCNR01000015
Bacillota
Ligilactobacillus animalis [MCNR]
131
57
-
Ala
TGC
[ENA]
¡û
>W1711345259
MCNR01000046
Bacillota
Ligilactobacillus animalis [MCNR]
802
728
-
Ala
TGC
[ENA]
¡û
>W1711683813
MRYQ01000049
Bacillota
Ligilactobacillus ruminis [MRYQ]
226
152
-
Ala
TGC
[ENA]
¡û
>WENV180119959
OASE01038160
[OASE] human gut metagenome; ENVO:feces
346
272
-
Ala
TGC
[ENA]
¢þ
>WENV180290577
OBIU01042945
[OBIU] human gut metagenome; human gut
154
80
-
Ala
TGC
[ENA]
¢þ
>WENV181235958
OFEY01009916
[OFEY] mouse gut metagenome; faeces
579
651
+
Ala
TGC
[ENA]
¢þ
>WENV181248523
OFFL01007668
[OFFL] mouse gut metagenome; faeces
126
200
+
Ala
TGC
[ENA]
¢þ
>WENV181258086
OFFU01032535
[OFFU] mouse gut metagenome; faeces
748
676
-
Ala
TGC
[ENA]
¢þ
>WENV181273979
OFGH01024615
[OFGH] mouse gut metagenome; faeces
809
883
+
Ala
TGC
[ENA]
¢þ
>WENV181451652
OGDY01010824
[OGDY] metagenome; Human gut stool
2712
2638
-
Ala
TGC
[ENA]
¢þ
>WENV181473464
OGFB01006347
[OGFB] metagenome; Human gut stool
1389
1315
-
Ala
TGC
[ENA]
¢þ
>WENV182320838
OHYJ01000692
[OHYJ] human gut metagenome; feces
58
132
+
Ala
TGC
[ENA]
¢þ
>WENV182362967
OICE01011348
[OICE] human gut metagenome; feces
51
125
+
Ala
TGC
[ENA]
¢þ
>WENV182925297
OKUI01036481
[OKUI] human gut metagenome; feces
501
427
-
Ala
TGC
[ENA]
¢þ
>WENV183047984
OLGF01031739
[OLGF] human gut metagenome; faeces
1249
1175
-
Ala
TGC
[ENA]
¢þ
>C191172056
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
306282
306356
+
Ala
TGC
-
¡û
>C191172065
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
412060
412134
+
Ala
TGC
-
¡û
>C191172110
CP039849
Bacillota
Ligilactobacillus animalis LL1 [CP039849]
1637413
1637339
-
Ala
TGC
-
¡û
>W141699191
JMHU01000024
Bacillota
Ligilactobacillus animalis [JMHU]
157
231
+
Ala
TGC
[ENA]
¡û
>W09123136
ACGS01000159
Bacillota
Ligilactobacillus ruminis ATCC 25644 [ACGS]
134
208
+
Ala
TGC
[ENA]
¡û
>W1910611644
LFJM01000003
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
126
52
-
Ala
TGC
[ENA]
¡û
>W1910611701
LFJM01000041
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
191
265
+
Ala
TGC
[ENA]
¡û
>W1910611702
LFJM01000042
Bacillota
Ligilactobacillus animalis 14-7927 [LFJM]
2
76
+
Ala
TGC
[ENA]
¡û
>C11119096
CP002901
Bacillota
Sulfobacillus acidophilus TPY [CP002901]
2433557
2433482
-
Ala
TGC
[Ensembl]
¡û
>C121007581
CP003179
Bacillota
Sulfobacillus acidophilus DSM 10332 [CP003179]
1244713
1244788
+
Ala
TGC
[Ensembl]
¡û
>W1610031006
AYYL01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
1517
1591
+
Ala
TGC
[ENA]
¡û
>WENV079374
AATC01000008
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
1032
955
-
Ala
TGC
[ENA]
>WENV079417
AATC01003800
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
248
325
+
Ala
TGC
[ENA]
>W1710027958
AYYL01000082
Bacillota
Ligilactobacillus ruminis DSM 20403 = NBRC 102161 [AYYL]
1517
1591
+
Ala
TGC
[ENA]
¡û
>W1710081590
BDFM01000080
Bacillota
Ligilactobacillus murinus [BDFM]
466
392
-
Ala
TGC
[ENA]
¡û
>W1710081624
BDFM01000218
Bacillota
Ligilactobacillus murinus [BDFM]
440
366
-
Ala
TGC
[ENA]
¡û
>W1710081632
BDFM01000291
Bacillota
Ligilactobacillus murinus [BDFM]
464
392
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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