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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356383 (27 seq.)
>W1711510626
MLBG01000048
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
19307
19382
+
Thr
TGT
[ENA]
¡û
>W141028010
ALAO01000394
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
4813
4888
+
Thr
TGT
[ENA]
¡û
>WENV180544055
OCIP01000524
[OCIP] human gut metagenome; human gut
1163
1238
+
Thr
TGT
[ENA]
¢þ
>WENV181714940
OGPR01011403
[OGPR] human gut metagenome; faeces
956
1031
+
Thr
TGT
[ENA]
¢þ
>WENV181995616
OHAT01005188
[OHAT] human gut metagenome; faeces
5080
5155
+
Thr
TGT
[ENA]
¢þ
>WENV182596040
OJIY01000442
[OJIY] metagenome; faeces
11788
11713
-
Thr
TGT
[ENA]
¢þ
>W141279156
JAGC01000005
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
600658
600583
-
Thr
TGT
[ENA]
¡û
>WENV182882561
OKSB01000766
[OKSB] human gut metagenome; faeces
23075
23150
+
Thr
TGT
[ENA]
¢þ
>WENV183501341
OMGS01000078
[OMGS] human gut metagenome; human gut
14811
14736
-
Thr
TGT
[ENA]
¢þ
>WENV183532837
OOAD01015198
[OOAD] human gut metagenome; human gut
1784
1709
-
Thr
TGT
[ENA]
¢þ
>WENV183545644
OOAQ01012580
[OOAQ] human gut metagenome; human gut
611
536
-
Thr
TGT
[ENA]
¢þ
>WENV183579763
OOCM01003632
[OOCM] human gut metagenome; human gut
3070
3145
+
Thr
TGT
[ENA]
¢þ
>C181081078
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
1056416
1056341
-
Thr
TGT
-
¡û
>C191045046
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
1492631
1492706
+
Thr
TGT
-
¡û
>W141731361
JNJA01000018
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
803
728
-
Thr
TGT
[ENA]
¡û
>W1910339999
FTLM01000032
Thermodesulfobacteriota
Mailhella massiliensis Marseille-P3199 [FTLM]
358323
358248
-
Thr
TGT
[ENA]
¡û
>C09104118
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
3539368
3539293
-
Thr
TGT
[Ensembl]
¡û
>W1810792948
QRJJ01000019
Thermodesulfobacteriota
Desulfovibrio sp. AM18-2 [QRJJ]
15119
15044
-
Thr
TGT
[ENA]
¡û
>W10111706
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
34289
34364
+
Thr
TGT
[ENA]
¡û
>W10112640
ADFE01000004
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
157588
157663
+
Thr
TGT
[ENA]
¡û
>C10104914
CP002085
Thermodesulfobacteriota
Desulfarculus baarsii DSM 2075 [CP002085]
3255622
3255547
-
Thr
TGT
[Ensembl]
¡û
>W11114633
ADDR01000130
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
34289
34364
+
Thr
TGT
[ENA]
¡û
>W11115855
ADFE02000001
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
329015
329090
+
Thr
TGT
[ENA]
¡û
>W1511365651
JSEH01000029
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
11189
11264
+
Thr
TGT
[ENA]
¡û
>W11133391
AECZ01000016
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
105004
104929
-
Thr
TGT
[ENA]
¡û
>C161069005
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
867894
867819
-
Thr
TGT
[Ensembl]
¡û
>W1710515577
FNBX01000001
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
244123
244048
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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