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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.356597 (97 seq.)
>W1710891007
LNCM01000024
Actinomycetota
Bifidobacterium longum subsp. longum [LNCM]
142096
142170
+
Gln
CTG
[ENA]
¡û
>W1711799085
MWVR01000002
Actinomycetota
Bifidobacterium breve [MWVR]
117841
117915
+
Gln
CTG
[ENA]
¡û
>WENV180120898
OASQ01000116
[OASQ] human gut metagenome; faeces
27640
27566
-
Gln
CTG
[ENA]
¢þ
>WENV180137749
OATP01000379
[OATP] human gut metagenome; faeces
2078
2004
-
Gln
CTG
[ENA]
¢þ
>WENV180141149
OATU01003063
[OATU] human gut metagenome; faeces
7160
7086
-
Gln
CTG
[ENA]
¢þ
>WENV180141913
OATV01000155
[OATV] human gut metagenome; faeces
19246
19172
-
Gln
CTG
[ENA]
¢þ
>WENV180143745
OATY01000208
[OATY] human gut metagenome; faeces
18224
18298
+
Gln
CTG
[ENA]
¢þ
>WENV180143764
OATY01000241
[OATY] human gut metagenome; faeces
6482
6408
-
Gln
CTG
[ENA]
¢þ
>WENV180162838
OAVH01000200
[OAVH] human gut metagenome; faeces
30355
30281
-
Gln
CTG
[ENA]
¢þ
>WENV180165185
OAVK01000142
[OAVK] human gut metagenome; faeces
45869
45943
+
Gln
CTG
[ENA]
¢þ
>WENV180168915
OAVS01000259
[OAVS] human gut metagenome; faeces
40096
40022
-
Gln
CTG
[ENA]
¢þ
>WENV180172878
OAVY01000071
[OAVY] human gut metagenome; faeces
4441
4367
-
Gln
CTG
[ENA]
¢þ
>WENV180179701
OAWJ01004972
[OAWJ] human gut metagenome; faeces
2280
2206
-
Gln
CTG
[ENA]
¢þ
>WENV180180239
OAWK01000015
[OAWK] human gut metagenome; faeces
79783
79857
+
Gln
CTG
[ENA]
¢þ
>WENV180187868
OAWW01001213
[OAWW] human gut metagenome; faeces
477
403
-
Gln
CTG
[ENA]
¢þ
>WENV180188937
OAWX01002914
[OAWX] human gut metagenome; faeces
3224
3298
+
Gln
CTG
[ENA]
¢þ
>WENV180194115
OAZX01000335
[OAZX] human gut metagenome; faeces
24007
24081
+
Gln
CTG
[ENA]
¢þ
>WENV180195879
OAZZ01002287
[OAZZ] human gut metagenome; faeces
2467
2393
-
Gln
CTG
[ENA]
¢þ
>WENV180245230
OBDM01005890
[OBDM] human gut metagenome; human gut
426
500
+
Gln
CTG
[ENA]
¢þ
>WENV180307995
OBJQ01012564
[OBJQ] human gut metagenome; human gut
233
159
-
Gln
CTG
[ENA]
¢þ
>WENV180412175
OBVA01000159
[OBVA] human gut metagenome; faeces
3309
3383
+
Gln
CTG
[ENA]
¢þ
>WENV180417855
OBVI01011850
[OBVI] human gut metagenome; faeces
79
5
-
Gln
CTG
[ENA]
¢þ
>WENV180435181
OBWL01009235
[OBWL] human gut metagenome; faeces
449
375
-
Gln
CTG
[ENA]
¢þ
>WENV180437067
OBWO01000438
[OBWO] human gut metagenome; faeces
3300
3374
+
Gln
CTG
[ENA]
¢þ
>WENV180437311
OBWO01002453
[OBWO] human gut metagenome; faeces
1141
1215
+
Gln
CTG
[ENA]
¢þ
>WENV180440540
OBWV01000586
[OBWV] human gut metagenome; faeces
11557
11631
+
Gln
CTG
[ENA]
¢þ
>WENV180441135
OBWW01000040
[OBWW] human gut metagenome; faeces
91094
91168
+
Gln
CTG
[ENA]
¢þ
>WENV180462436
OBYB01002464
[OBYB] human gut metagenome; faeces
3597
3671
+
Gln
CTG
[ENA]
¢þ
>WENV180475995
OBYW01000313
[OBYW] human gut metagenome; faeces
14747
14673
-
Gln
CTG
[ENA]
¢þ
>WENV180478307
OBZB01000047
[OBZB] human gut metagenome; faeces
32749
32675
-
Gln
CTG
[ENA]
¢þ
>WENV180478350
OBZB01000123
[OBZB] human gut metagenome; faeces
5282
5208
-
Gln
CTG
[ENA]
¢þ
>WENV180480216
OBZD01000301
[OBZD] human gut metagenome; faeces
13503
13429
-
Gln
CTG
[ENA]
¢þ
>WENV180484921
OBZJ01000148
[OBZJ] human gut metagenome; faeces
44169
44243
+
Gln
CTG
[ENA]
¢þ
>WENV180497916
OCAF01000114
[OCAF] human gut metagenome; faeces
7618
7544
-
Gln
CTG
[ENA]
¢þ
>WENV180501544
OCAK01001911
[OCAK] human gut metagenome; faeces
8762
8688
-
Gln
CTG
[ENA]
¢þ
>WENV181151935
OEHZ01003895
[OEHZ] human gut metagenome; human gut
250
176
-
Gln
CTG
[ENA]
¢þ
>WENV181173442
OEJF01000010
[OEJF] human gut metagenome; human gut
2139
2213
+
Gln
CTG
[ENA]
¢þ
>WENV181217730
OFCL01000028
[OFCL] metagenome; Human gut stool
64892
64818
-
Gln
CTG
[ENA]
¢þ
>WENV181218693
OFCN01000016
[OFCN] metagenome; Human gut stool
58813
58887
+
Gln
CTG
[ENA]
¢þ
>WENV181222034
OFDA01000022
[OFDA] metagenome; Human gut stool
58818
58892
+
Gln
CTG
[ENA]
¢þ
>WENV181456970
OGEH01002688
[OGEH] metagenome; Human gut stool
1977
2051
+
Gln
CTG
[ENA]
¢þ
>WENV181589742
OGKM01000079
[OGKM] metagenome; Human gut stool
70753
70827
+
Gln
CTG
[ENA]
¢þ
>WENV181702700
OGPJ01000563
[OGPJ] human gut metagenome; faeces
10274
10348
+
Gln
CTG
[ENA]
¢þ
>WENV181708579
OGPM01003380
[OGPM] human gut metagenome; faeces
1155
1229
+
Gln
CTG
[ENA]
¢þ
>WENV181727374
OGQA01000088
[OGQA] human gut metagenome; faeces
52606
52532
-
Gln
CTG
[ENA]
¢þ
>WENV181751155
OGQP01029008
[OGQP] human gut metagenome; faeces
324
250
-
Gln
CTG
[ENA]
¢þ
>WENV181772964
OGRD01047006
[OGRD] human gut metagenome; faeces
549
623
+
Gln
CTG
[ENA]
¢þ
>WENV182538860
OIXV01000385
[OIXV] human gut metagenome; faeces
7210
7136
-
Gln
CTG
[ENA]
¢þ
>WENV182736005
OJQH01000011
[OJQH] human gut metagenome; stool sample
80367
80293
-
Gln
CTG
[ENA]
¢þ
>WENV182755011
OJRE01000913
[OJRE] human gut metagenome; stool sample
8764
8690
-
Gln
CTG
[ENA]
¢þ
>WENV182821759
OKBA01000532
[OKBA] human gut metagenome; human gut
1660
1734
+
Gln
CTG
[ENA]
¢þ
>WENV183101334
OLNH01000032
[OLNH] human gut metagenome; faeces
765
839
+
Gln
CTG
[ENA]
¢þ
>WENV183114765
OLNQ01001576
[OLNQ] human gut metagenome; faeces
11746
11672
-
Gln
CTG
[ENA]
¢þ
>WENV183116318
OLNR01000009
[OLNR] human gut metagenome; faeces
108531
108457
-
Gln
CTG
[ENA]
¢þ
>WENV183137783
OLOH01000051
[OLOH] human gut metagenome; faeces
86199
86273
+
Gln
CTG
[ENA]
¢þ
>WENV183139404
OLOI01000449
[OLOI] human gut metagenome; faeces
8810
8736
-
Gln
CTG
[ENA]
¢þ
>WENV183182286
OLPK01000122
[OLPK] human gut metagenome; faeces
57435
57509
+
Gln
CTG
[ENA]
¢þ
>WENV183183620
OLPL01001018
[OLPL] human gut metagenome; faeces
7666
7592
-
Gln
CTG
[ENA]
¢þ
>WENV183188129
OLPP01000133
[OLPP] human gut metagenome; faeces
7618
7544
-
Gln
CTG
[ENA]
¢þ
>WENV183191091
OLPR01004368
[OLPR] human gut metagenome; faeces
7618
7544
-
Gln
CTG
[ENA]
¢þ
>WENV183245413
OLRE01003079
[OLRE] human gut metagenome; faeces
10747
10821
+
Gln
CTG
[ENA]
¢þ
>WENV183284988
OLSE01000020
[OLSE] human gut metagenome; faeces
219635
219561
-
Gln
CTG
[ENA]
¢þ
>WENV183294913
OLSL01000052
[OLSL] human gut metagenome; faeces
48995
48921
-
Gln
CTG
[ENA]
¢þ
>WENV183455130
OMDG01007186
[OMDG] human gut metagenome; feces
418
344
-
Gln
CTG
[ENA]
¢þ
>WENV183483873
OMFO01000017
[OMFO] human gut metagenome; feces
60844
60770
-
Gln
CTG
[ENA]
¢þ
>WENV183488737
OMFZ01000474
[OMFZ] human gut metagenome; feces
7618
7544
-
Gln
CTG
[ENA]
¢þ
>WENV183590440
OOCX01000467
[OOCX] human gut metagenome; human gut
23991
24065
+
Gln
CTG
[ENA]
¢þ
>WENV170542120
CXPX01000022
[CXPX] human gut metagenome genome assembly hB4, contig hB4_contig000347.; ENVO:feces
49987
50061
+
Gln
CTG
[ENA]
¢þ
>WENV170542620
CXQF01000355
[CXQF] human gut metagenome genome assembly hC12, contig; ENVO:feces
355
429
+
Gln
CTG
[ENA]
¢þ
>WENV170542997
CXQL01000692
[CXQL] human gut metagenome genome assembly hC7, contig hC7_contig002501.; ENVO:feces
73
1
-
Gln
CTG
[ENA]
¢þ
>WENV170545483
CXSC01000071
[CXSC] human gut metagenome genome assembly hG5, contig hG5_contig000614.; ENVO:feces
19058
18984
-
Gln
CTG
[ENA]
¢þ
>WENV170547285
CXTK01000007
[CXTK] Human gut metagenome genome assembly, contig: mC9_contig000160.; ENVO:feces
81370
81444
+
Gln
CTG
[ENA]
¢þ
>WENV170547329
CXTK01000106
[CXTK] Human gut metagenome genome assembly, contig: mC9_contig000160.; ENVO:feces
238
312
+
Gln
CTG
[ENA]
¢þ
>C181051705
CP021386
Actinomycetota
Bifidobacterium breve NRBB04 [CP021386]
232676
232750
+
Gln
CTG
-
¡û
>C181051755
CP021387
Actinomycetota
Bifidobacterium breve NRBB09 [CP021387]
272464
272538
+
Gln
CTG
-
¡û
>C181052063
CP021393
Actinomycetota
Bifidobacterium breve NRBB52 [CP021393]
246092
246166
+
Gln
CTG
-
¡û
>C181077281
CP023193
Actinomycetota
Bifidobacterium breve NRBB18 [CP023193]
223616
223542
-
Gln
CTG
-
¡û
>W1910343485
FTRS01000227
Actinomycetota
Bifidobacterium longum [FTRS]
2077
2003
-
Gln
CTG
[ENA]
¡û
>W1910953427
NJOC01000026
Actinomycetota
Bifidobacterium breve W20-13 [NJOC]
26546
26472
-
Gln
CTG
[ENA]
¡û
>W1910953529
NJOF01000003
Actinomycetota
Bifidobacterium breve Jan-91 [NJOF]
178774
178848
+
Gln
CTG
[ENA]
¡û
>W1810796588
QRLW01000002
Actinomycetota
Bifidobacterium longum AM11-2 [QRLW]
404574
404500
-
Gln
CTG
[ENA]
¡û
>W1810836994
QSSF01000002
Actinomycetota
Bifidobacterium longum TF06-12AC [QSSF]
7623
7549
-
Gln
CTG
[ENA]
¡û
>W1510060032
CCWU01000002
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
185833
185907
+
Gln
CTG
[ENA]
¡û
>C11103137
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
228380
228454
+
Gln
CTG
-
¡û
>C11103204
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
228380
228454
+
Gln
CTG
-
¡û
>W1511681090
LFII01000004
Actinomycetota
Bifidobacterium breve BBRI4 [LFII]
96632
96706
+
Gln
CTG
[ENA]
¡û
>W1610027394
AVQA01000007
Actinomycetota
Bifidobacterium breve MCC 0121 [AVQA]
130855
130781
-
Gln
CTG
[ENA]
¡û
>W1610027432
AVQB01000004
Actinomycetota
Bifidobacterium breve MCC 0476 [AVQB]
268628
268702
+
Gln
CTG
[ENA]
¡û
>W1610060690
BCFK01000061
Actinomycetota
Bifidobacterium aesculapii [BCFK]
16293
16367
+
Gln
CTG
[ENA]
¡û
>W1610075213
BCXU01000031
Actinomycetota
Bifidobacterium breve [BCXU]
140167
140093
-
Gln
CTG
[ENA]
¡û
>W1610075332
BCXW01000039
Actinomycetota
Bifidobacterium breve [BCXW]
76648
76722
+
Gln
CTG
[ENA]
¡û
>W1610751403
LNCM01000024
Actinomycetota
Bifidobacterium longum subsp. longum [LNCM]
142096
142170
+
Gln
CTG
[ENA]
¡û
>W1710023628
AVQA01000007
Actinomycetota
Bifidobacterium breve MCC 0121 [AVQA]
130855
130781
-
Gln
CTG
[ENA]
¡û
>W1710023666
AVQB01000004
Actinomycetota
Bifidobacterium breve MCC 0476 [AVQB]
268628
268702
+
Gln
CTG
[ENA]
¡û
>W1710057945
BCFK01000061
Actinomycetota
Bifidobacterium aesculapii [BCFK]
16293
16367
+
Gln
CTG
[ENA]
¡û
>W1710073028
BCXU01000031
Actinomycetota
Bifidobacterium breve [BCXU]
140167
140093
-
Gln
CTG
[ENA]
¡û
>W1710073147
BCXW01000039
Actinomycetota
Bifidobacterium breve [BCXW]
76648
76722
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK