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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.357939 (73 seq.)
>W1711187733
LWPS01000096
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
12090
12164
+
Cys
GCA
[ENA]
¡û
>W1711293935
LZYZ01000007
Bacillota
Clostridium saccharobutylicum [LZYZ]
185059
185133
+
Cys
GCA
[ENA]
¡û
>W1711294000
LZZA01000136
Bacillota
Clostridium saccharobutylicum [LZZA]
449
523
+
Cys
GCA
[ENA]
¡û
>W131001732
AGYK01000001
Bacillota
Clostridium butyricum 60E.3 [AGYK]
880159
880085
-
Cys
GCA
[ENA]
¡û
>W131110771
APKZ01000028
Bacillota
Clostridium butyricum DKU-01 [APKZ]
71219
71293
+
Cys
GCA
[ENA]
¡û
>C171021767
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
1901487
1901413
-
Cys
GCA
-
¡û
>C171045615
CP016086
Bacillota
Clostridium saccharobutylicum NCP 200 [CP016086]
3069945
3070019
+
Cys
GCA
-
¡û
>C171045772
CP016089
Bacillota
Clostridium saccharobutylicum BAS/B3/SW/136 [CP016089]
3070557
3070631
+
Cys
GCA
-
¡û
>C171045941
CP016091
Bacillota
Clostridium saccharobutylicum NCP 258 [CP016091]
3031779
3031853
+
Cys
GCA
-
¡û
>C171047615
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
1521523
1521449
-
Cys
GCA
-
¡û
>WENV180298025
OBJA01142998
[OBJA] soil metagenome; sediment, water from around vicinity
165
239
+
Cys
GCA
[ENA]
¢þ
>WENV180334611
OBLF01024173
[OBLF] metagenome; feces
467
541
+
Cys
GCA
[ENA]
¢þ
>WENV180712709
ODFT01029559
[ODFT] human metagenome; G_DNA_Posterior fornix
141
67
-
Cys
GCA
[ENA]
¢þ
>W08001299
ABDT01000010
Bacillota
Clostridium butyricum 5521 [ABDT]
9215
9144
-
Cys
GCA
[ENA]
¡û
>WENV181555212
OGIT01000162
[OGIT] metagenome; Human gut stool
15218
15144
-
Cys
GCA
[ENA]
¢þ
>WENV181687256
OGOX01000453
[OGOX] human gut metagenome; faeces
116
190
+
Cys
GCA
[ENA]
¢þ
>WENV181798267
OGRV01000007
[OGRV] human gut metagenome; fecal sample 3 from infant 4
12120
12194
+
Cys
GCA
[ENA]
¢þ
>WENV181798852
OGRX01000571
[OGRX] human gut metagenome; fecal sample 2 from infant 8
9500
9574
+
Cys
GCA
[ENA]
¢þ
>WENV181801433
OGSB01000281
[OGSB] human gut metagenome; fecal sample 5 from infant 3
13829
13903
+
Cys
GCA
[ENA]
¢þ
>WENV181801895
OGSC01000277
[OGSC] human gut metagenome; fecal sample 8 from infant 5
19553
19627
+
Cys
GCA
[ENA]
¢þ
>WENV181805033
OGSH01000317
[OGSH] human gut metagenome; fecal sample 5 from infant 6
18634
18708
+
Cys
GCA
[ENA]
¢þ
>WENV181805329
OGSI01000084
[OGSI] human gut metagenome; fecal sample 4 from infant 8
32603
32677
+
Cys
GCA
[ENA]
¢þ
>WENV181805727
OGSJ01000351
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
18629
18703
+
Cys
GCA
[ENA]
¢þ
>WENV181807140
OGSN01004357
[OGSN] human gut metagenome; fecal sample 7 from infant 8
708
782
+
Cys
GCA
[ENA]
¢þ
>WENV181807822
OGSQ01000280
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
12118
12192
+
Cys
GCA
[ENA]
¢þ
>WENV181807832
OGSQ01000328
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
11107
11181
+
Cys
GCA
[ENA]
¢þ
>WENV181809321
OGST01000002
[OGST] human gut metagenome; fecal sample 7 from infant 6
32477
32551
+
Cys
GCA
[ENA]
¢þ
>WENV181810571
OGSV01000247
[OGSV] human gut metagenome; fecal sample 4 from infant 3
19554
19628
+
Cys
GCA
[ENA]
¢þ
>WENV181813736
OGTD01000391
[OGTD] human gut metagenome; fecal sample 1 from infant 3
9572
9646
+
Cys
GCA
[ENA]
¢þ
>WENV181814401
OGTG01000075
[OGTG] human gut metagenome; fecal sample 1 from infant 4
12117
12191
+
Cys
GCA
[ENA]
¢þ
>WENV181815031
OGTI01000145
[OGTI] human gut metagenome; fecal sample 5 from infant 1
13930
14004
+
Cys
GCA
[ENA]
¢þ
>WENV181817498
OGTN01000266
[OGTN] human gut metagenome; fecal sample 5 from infant 4
12155
12229
+
Cys
GCA
[ENA]
¢þ
>WENV181818158
OGTS01000007
[OGTS] human gut metagenome; fecal sample 4 from infant 4
12120
12194
+
Cys
GCA
[ENA]
¢þ
>WENV181818618
OGTT01000437
[OGTT] human gut metagenome; fecal sample 6 from infant 8
12057
12131
+
Cys
GCA
[ENA]
¢þ
>WENV181818899
OGTU01000136
[OGTU] human gut metagenome; fecal sample 6 from infant 4
12118
12192
+
Cys
GCA
[ENA]
¢þ
>WENV181823000
OGUH01002777
[OGUH] human gut metagenome; fecal sample 3 from infant 3
842
916
+
Cys
GCA
[ENA]
¢þ
>W141206242
AZLX01000053
Bacillota
Clostridium butyricum DORA_1 [AZLX]
22945
22871
-
Cys
GCA
[ENA]
¡û
>W141259004
CBYK010000006
Bacillota
Clostridium butyricum [CBYK]
54280
54354
+
Cys
GCA
[ENA]
¡û
>WENV182945110
OKVJ01011482
[OKVJ] human gut metagenome; human gut
180
254
+
Cys
GCA
[ENA]
¢þ
>WENV182950628
OKVS01002923
[OKVS] human gut metagenome; human gut
586
660
+
Cys
GCA
[ENA]
¢þ
>WENV182955648
OKWD01010664
[OKWD] human gut metagenome; human gut
935
1009
+
Cys
GCA
[ENA]
¢þ
>WENV183648876
OQVS01051231
[OQVS] human gut metagenome; human gut
36
110
+
Cys
GCA
[ENA]
¢þ
>WENV170561901
CZCB01000314
[CZCB] anaerobic digester metagenome; anaerobic digester
76409
76483
+
Cys
GCA
[ENA]
¢þ
>WENV170689871
LFRM01315166
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
102
176
+
Cys
GCA
[ENA]
¢þ
>WENV170690994
LFRM01374712
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
34175
34249
+
Cys
GCA
[ENA]
¢þ
>WENV170719884
LSQX01132819
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12376
12302
-
Cys
GCA
[ENA]
¢þ
>C181226491
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
1926488
1926414
-
Cys
GCA
-
¡û
>C191171207
CP039702
Bacillota
Clostridium butyricum [CP039702]
1581040
1580966
-
Cys
GCA
-
¡û
>C191171256
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
399107
399181
+
Cys
GCA
-
¡û
>W09132866
ACOM01000005
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
1473236
1473310
+
Cys
GCA
[ENA]
¡û
>W141804487
JPIC01000017
Bacillota
Mageeibacillus indolicus BVAB3 str. S7-24-11 [JPIC]
18421
18347
-
Cys
GCA
[ENA]
¡û
>C141007633
CP006721
Bacillota
Clostridium saccharobutylicum DSM 13864 [CP006721]
3070555
3070629
+
Cys
GCA
[Ensembl]
¡û
>W1910637982
LRDH01000111
Bacillota
Clostridium butyricum 300064 [LRDH]
19687
19761
+
Cys
GCA
[ENA]
¡û
>W1910859457
NBZD01000001
Bacillota
Mageeibacillus indolicus KA00405 [NBZD]
869803
869729
-
Cys
GCA
[ENA]
¡û
>W1910927538
NIOI01000004
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
85928
86002
+
Cys
GCA
[ENA]
¡û
>W1910927571
NIOJ01000029
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
23718
23644
-
Cys
GCA
[ENA]
¡û
>W1911491608
OAOH01000001
Bacillota
Clostridium cochlearium [OAOH]
385770
385844
+
Cys
GCA
[ENA]
¡û
>W1810805939
QRUG01000009
Bacillota
Clostridium butyricum AF25-25 [QRUG]
53766
53692
-
Cys
GCA
[ENA]
¡û
>C10103488
CP001850
Bacillota
Mageeibacillus indolicus UPII9-5 [CP001850]
1427127
1427053
-
Cys
GCA
[Ensembl]
¡û
>W1511350246
JRMA01000105
Bacillota
Clostridium butyricum INCQS635 [JRMA]
62132
62206
+
Cys
GCA
[ENA]
¡û
>W1511365578
JSEG01000002
Bacillota
Clostridium butyricum NOR 33234 [JSEG]
71496
71570
+
Cys
GCA
[ENA]
¡û
>W1511554770
JZWE01000104
Bacillota
Clostridium sp. IBUN22A [JZWE]
1296
1370
+
Cys
GCA
[ENA]
¡û
>W1511554842
JZWF01000054
Bacillota
Clostridium sp. IBUN125C [JZWF]
8345
8271
-
Cys
GCA
[ENA]
¡û
>W1511554914
JZWG01000242
Bacillota
Clostridium sp. IBUN13A [JZWG]
6183
6109
-
Cys
GCA
[ENA]
¡û
>W1511554919
JZWH01000005
Bacillota
Clostridium sp. IBUN62F [JZWH]
180691
180765
+
Cys
GCA
[ENA]
¡û
>C161054165
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
1833128
1833054
-
Cys
GCA
-
¡û
>C161055938
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
1517904
1517830
-
Cys
GCA
-
¡û
>C161076447
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
1505398
1505324
-
Cys
GCA
-
¡û
>W1610605784
LFSG01000061
Bacillota
Clostridiales bacterium DTU072 [LFSG]
34175
34249
+
Cys
GCA
[ENA]
¡û
>W1610627643
LIDW01000010
Bacillota
Clostridium butyricum [LIDW]
61345
61419
+
Cys
GCA
[ENA]
¡û
>W1710521498
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
241124
241198
+
Cys
GCA
[ENA]
¡û
>W1710727071
LFSG01000061
Bacillota
Clostridiales bacterium DTU072 [LFSG]
34175
34249
+
Cys
GCA
[ENA]
¡û
>W1710758770
LIDW01000010
Bacillota
Clostridium butyricum [LIDW]
61345
61419
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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