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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358545 (17 seq.)
>W131161675
AQXX01000125
Gammaproteobacteria
Hahella ganghwensis DSM 17046 [AQXX]
89248
89174
-
Glu
TTC
[ENA]
¡û
>WENV180282635
OBIC01000563
[OBIC] beach sand metagenome; beach sand
6235
6161
-
Glu
TTC
[ENA]
¢þ
>WENV180315298
OBKH01060390
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
168
242
+
Glu
TTC
[ENA]
¢þ
>WENV183719398
PDWJ01013782
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1018
1092
+
Glu
TTC
[ENA]
¢þ
>C181178983
CP029478
Gammaproteobacteria
Gammaproteobacteria bacterium ESL0073 [CP029478]
2785100
2785174
+
Glu
TTC
-
¡û
>C181179004
CP029478
Gammaproteobacteria
Gammaproteobacteria bacterium ESL0073 [CP029478]
550930
550856
-
Glu
TTC
-
¡û
>C191065622
CP029822
Gammaproteobacteria
Entomomonas moraniae QZS01 [CP029822]
2095868
2095942
+
Glu
TTC
-
¡û
>C191065633
CP029822
Gammaproteobacteria
Entomomonas moraniae QZS01 [CP029822]
3165176
3165102
-
Glu
TTC
-
¡û
>C191126809
CP034537
Gammaproteobacteria
Pseudomonas poae CAP-2018 [CP034537]
3650865
3650939
+
Glu
TTC
-
¡û
>C191126811
CP034537
Gammaproteobacteria
Pseudomonas poae CAP-2018 [CP034537]
3651146
3651220
+
Glu
TTC
-
¡û
>C191126827
CP034537
Gammaproteobacteria
Pseudomonas poae CAP-2018 [CP034537]
6591884
6591810
-
Glu
TTC
-
¡û
>C191170589
CP039631
Gammaproteobacteria
Pseudomonas veronii Pvy [CP039631]
3826746
3826820
+
Glu
TTC
-
¡û
>C191170591
CP039631
Gammaproteobacteria
Pseudomonas veronii Pvy [CP039631]
3827025
3827099
+
Glu
TTC
-
¡û
>C191170605
CP039631
Gammaproteobacteria
Pseudomonas veronii Pvy [CP039631]
6706758
6706684
-
Glu
TTC
-
¡û
>C141001549
CP003547
Gammaproteobacteria
secondary endosymbiont of Heteropsylla cubana [CP003547]
517807
517881
+
Glu
TTC
[Ensembl]
¡û
>W1911585107
PIPQ01000003
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
131819
131745
-
Glu
TTC
[ENA]
¡û
>W1911585108
PIPQ01000003
Gammaproteobacteria
Aliidiomarina taiwanensis AIT1 [PIPQ]
131706
131632
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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