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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358572 (79 seq.)
>W1711081312
LSSO01000112
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
121
195
+
Asn
GTT
[ENA]
¡û
>W1711081324
LSSO01000134
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
80028
79954
-
Asn
GTT
[ENA]
¡û
>W1711081356
LSSO01000185
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
25798
25724
-
Asn
GTT
[ENA]
¡û
>W1711081366
LSSO01000188
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
26
100
+
Asn
GTT
[ENA]
¡û
>W1711326414
MBFH01000006
Bacillota
Brevibacillus laterosporus [MBFH]
12
86
+
Asn
GTT
[ENA]
¡û
>W1711326456
MBFH01000061
Bacillota
Brevibacillus laterosporus [MBFH]
121
195
+
Asn
GTT
[ENA]
¡û
>W131170733
ARFS01000038
Bacillota
Brevibacillus laterosporus DSM 25 [ARFS]
19387
19313
-
Asn
GTT
[ENA]
¡û
>W131170752
ARFS01000043
Bacillota
Brevibacillus laterosporus DSM 25 [ARFS]
77675
77601
-
Asn
GTT
[ENA]
¡û
>WENV180014371
FPIC01213507
[FPIC] soil metagenome; Soil
98
24
-
Asn
GTT
[ENA]
¢þ
>W141152314
AXBT01000005
Bacillota
Brevibacillus laterosporus PE36 [AXBT]
100799
100725
-
Asn
GTT
[ENA]
¡û
>W141152335
AXBT01000010
Bacillota
Brevibacillus laterosporus PE36 [AXBT]
35
109
+
Asn
GTT
[ENA]
¡û
>W141152389
AXBT01000045
Bacillota
Brevibacillus laterosporus PE36 [AXBT]
77886
77812
-
Asn
GTT
[ENA]
¡û
>W141240240
CAGD01000001
Bacillota
Brevibacillus laterosporus GI-9 [CAGD]
512111
512037
-
Asn
GTT
[ENA]
¡û
>W141240328
CAGD01000039
Bacillota
Brevibacillus laterosporus GI-9 [CAGD]
31329
31255
-
Asn
GTT
[ENA]
¡û
>W141240963
CAGW01000059
Bacillota
Brevibacillus massiliensis phR [CAGW]
7
81
+
Asn
GTT
[ENA]
¡û
>W141241000
CAGW01000118
Bacillota
Brevibacillus massiliensis phR [CAGW]
7
81
+
Asn
GTT
[ENA]
¡û
>C181027531
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
2352766
2352840
+
Asn
GTT
-
¡û
>C181027554
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
2577005
2577079
+
Asn
GTT
-
¡û
>C181027567
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
2915244
2915318
+
Asn
GTT
-
¡û
>C181027605
CP017705
Bacillota
Brevibacillus laterosporus DSM 25 [CP017705]
1206166
1206092
-
Asn
GTT
-
¡û
>C181118921
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
215583
215657
+
Asn
GTT
-
¡û
>C181118946
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
468813
468887
+
Asn
GTT
-
¡û
>C181118959
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
766882
766956
+
Asn
GTT
-
¡û
>C181118994
CP025545
Bacillota
Brevibacillus laterosporus ZQ2 [CP025545]
4341963
4341889
-
Asn
GTT
-
¡û
>C191089114
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
5429801
5429875
+
Asn
GTT
-
¡û
>C191089135
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
4225559
4225485
-
Asn
GTT
-
¡û
>C191089160
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
3982002
3981928
-
Asn
GTT
-
¡û
>C191089173
CP032410
Bacillota
Brevibacillus laterosporus E7593-50 [CP032410]
3602885
3602811
-
Asn
GTT
-
¡û
>C191095522
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
1638559
1638633
+
Asn
GTT
-
¡û
>C191095547
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
1864332
1864406
+
Asn
GTT
-
¡û
>C191095560
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
2163221
2163295
+
Asn
GTT
-
¡û
>C191095605
CP032848
Bacillota
Brevibacillus laterosporus Bl-zj [CP032848]
572038
571964
-
Asn
GTT
-
¡û
>C191126921
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
254614
254688
+
Asn
GTT
-
¡û
>C191126934
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
567124
567198
+
Asn
GTT
-
¡û
>C191126947
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
948032
948106
+
Asn
GTT
-
¡û
>C191126960
CP034541
Bacillota
Brevibacillus marinus SCSIO 07484 [CP034541]
1227515
1227589
+
Asn
GTT
-
¡û
>W141727936
JNFS01000001
Bacillota
Brevibacillus laterosporus [JNFS]
2503853
2503927
+
Asn
GTT
[ENA]
¡û
>W141727948
JNFS01000001
Bacillota
Brevibacillus laterosporus [JNFS]
1733220
1733146
-
Asn
GTT
[ENA]
¡û
>W141727971
JNFS01000001
Bacillota
Brevibacillus laterosporus [JNFS]
1375077
1375003
-
Asn
GTT
[ENA]
¡û
>W141728003
JNFS01000001
Bacillota
Brevibacillus laterosporus [JNFS]
673967
673893
-
Asn
GTT
[ENA]
¡û
>W141728024
JNFS01000002
Bacillota
Brevibacillus laterosporus [JNFS]
302704
302778
+
Asn
GTT
[ENA]
¡û
>W1910665265
MCHY01000001
Bacillota
Ammoniphilus oxalaticus RAOx-1 [MCHY]
82
156
+
Asn
GTT
[ENA]
¡û
>W1910873551
NDIP01000015
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
128595
128521
-
Asn
GTT
[ENA]
¡û
>W1910873561
NDIP01000017
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
101447
101373
-
Asn
GTT
[ENA]
¡û
>W1910873574
NDIP01000021
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
78074
78000
-
Asn
GTT
[ENA]
¡û
>W1910873608
NDIP01000031
Bacillota
Brevibacillus laterosporus Lak 1210 [NDIP]
276
350
+
Asn
GTT
[ENA]
¡û
>W1911119457
NOLX01000015
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
177
251
+
Asn
GTT
[ENA]
¡û
>W1911119471
NOLX01000019
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
177
251
+
Asn
GTT
[ENA]
¡û
>W1911119497
NOLX01000039
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
177
251
+
Asn
GTT
[ENA]
¡û
>W1911119520
NOLX01000092
Bacillota
Brevibacillus laterosporus OSY-I1 [NOLX]
383
309
-
Asn
GTT
[ENA]
¡û
>W1911681067
QJSB01000037
Bacillota
Brevibacillus laterosporus BON707 [QJSB]
80
154
+
Asn
GTT
[ENA]
¡û
>W1810270922
PRKQ01000019
Bacillota
Brevibacillus laterosporus BGSP11 [PRKQ]
108231
108157
-
Asn
GTT
[ENA]
¡û
>W1810270943
PRKQ01000028
Bacillota
Brevibacillus laterosporus BGSP11 [PRKQ]
177
251
+
Asn
GTT
[ENA]
¡û
>W1810270957
PRKQ01000034
Bacillota
Brevibacillus laterosporus BGSP11 [PRKQ]
177
251
+
Asn
GTT
[ENA]
¡û
>W1810271038
PRKR01000010
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
178
252
+
Asn
GTT
[ENA]
¡û
>W1810271048
PRKR01000026
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
87946
87872
-
Asn
GTT
[ENA]
¡û
>W1810271072
PRKR01000037
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
177
251
+
Asn
GTT
[ENA]
¡û
>W1810271088
PRKR01000043
Bacillota
Brevibacillus laterosporus BGSP9 [PRKR]
42100
42026
-
Asn
GTT
[ENA]
¡û
>W1810271152
PRKS01000014
Bacillota
Brevibacillus laterosporus BGSP7 [PRKS]
169307
169233
-
Asn
GTT
[ENA]
¡û
>W1810271165
PRKS01000015
Bacillota
Brevibacillus laterosporus BGSP7 [PRKS]
177
251
+
Asn
GTT
[ENA]
¡û
>W1810271175
PRKS01000018
Bacillota
Brevibacillus laterosporus BGSP7 [PRKS]
125755
125681
-
Asn
GTT
[ENA]
¡û
>W1810658133
QJJD01000002
Bacillota
Brevibacillus laterosporus MG64 [QJJD]
56304
56378
+
Asn
GTT
[ENA]
¡û
>W1810658181
QJJD01000060
Bacillota
Brevibacillus laterosporus MG64 [QJJD]
134
208
+
Asn
GTT
[ENA]
¡û
>W1810888332
QUQX01000007
Bacillota
Brevibacillus sp. VP [QUQX]
274243
274169
-
Asn
GTT
[ENA]
¡û
>W1810888410
QUQX01000057
Bacillota
Brevibacillus sp. VP [QUQX]
141
215
+
Asn
GTT
[ENA]
¡û
>C151035233
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
213455
213529
+
Asn
GTT
[Ensembl]
¡û
>C151035258
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
441038
441112
+
Asn
GTT
[Ensembl]
¡û
>C151035271
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
742933
743007
+
Asn
GTT
[Ensembl]
¡û
>C151035309
CP007806
Bacillota
Brevibacillus laterosporus LMG 15441 [CP007806]
4250093
4250019
-
Asn
GTT
[Ensembl]
¡û
>W11172292
AFRV01000001
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
219075
219001
-
Asn
GTT
[ENA]
¡û
>W11172316
AFRV01000002
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
860414
860340
-
Asn
GTT
[ENA]
¡û
>W11172329
AFRV01000002
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
558518
558444
-
Asn
GTT
[ENA]
¡û
>W11172368
AFRV01000008
Bacillota
Brevibacillus laterosporus LMG 15441 [AFRV]
14261
14335
+
Asn
GTT
[ENA]
¡û
>W1610920147
LSSO01000112
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
121
195
+
Asn
GTT
[ENA]
¡û
>W1610920159
LSSO01000134
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
80028
79954
-
Asn
GTT
[ENA]
¡û
>W1610920191
LSSO01000185
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
25798
25724
-
Asn
GTT
[ENA]
¡û
>W1610920201
LSSO01000188
Bacillota
Brevibacillus sp. SKDU10 [LSSO]
26
100
+
Asn
GTT
[ENA]
¡û
>W1611063267
MBFH01000006
Bacillota
Brevibacillus laterosporus [MBFH]
12
86
+
Asn
GTT
[ENA]
¡û
>W1611063309
MBFH01000061
Bacillota
Brevibacillus laterosporus [MBFH]
121
195
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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