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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358597 (76 seq.)
>W1711185394
LWNI01000085
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
13050
13124
+
Arg
CCT
[ENA]
¡û
>W1711222908
LXSL01000020
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
31112
31186
+
Arg
CCT
[ENA]
¡û
>W1711223028
LXSO01000002
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
308809
308883
+
Arg
CCT
[ENA]
¡û
>W1711223066
LXSP01000001
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
308595
308669
+
Arg
CCT
[ENA]
¡û
>W1711223240
LXST01000001
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
345387
345461
+
Arg
CCT
[ENA]
¡û
>W1711712062
MTBM01000006
Betaproteobacteria
Neisseria zoodegmatis [MTBM]
126881
126955
+
Arg
CCT
[ENA]
¡û
>W1711712093
MTBN01000001
Betaproteobacteria
Neisseria animaloris [MTBN]
290480
290554
+
Arg
CCT
[ENA]
¡û
>W1711712152
MTBO01000005
Betaproteobacteria
Neisseria dentiae [MTBO]
60973
60899
-
Arg
CCT
[ENA]
¡û
>WENV180735779
ODHB01000650
[ODHB] human metagenome; G_DNA_Supragingival plaque
9217
9143
-
Arg
CCT
[ENA]
¢þ
>WENV180738945
ODHD01001411
[ODHD] human metagenome; G_DNA_Supragingival plaque
174
100
-
Arg
CCT
[ENA]
¢þ
>WENV180750905
ODHS01012226
[ODHS] human metagenome; G_DNA_Supragingival plaque
2410
2484
+
Arg
CCT
[ENA]
¢þ
>WENV180787776
ODIS01014889
[ODIS] human metagenome; G_DNA_Supragingival plaque
2209
2135
-
Arg
CCT
[ENA]
¢þ
>WENV180795830
ODJB01000365
[ODJB] human metagenome; G_DNA_Supragingival plaque
27536
27610
+
Arg
CCT
[ENA]
¢þ
>WENV180796750
ODJB01012529
[ODJB] human metagenome; G_DNA_Supragingival plaque
2146
2220
+
Arg
CCT
[ENA]
¢þ
>WENV180801234
ODJD01015363
[ODJD] human metagenome; G_DNA_Supragingival plaque
170
96
-
Arg
CCT
[ENA]
¢þ
>WENV180804765
ODJG01011837
[ODJG] human metagenome; G_DNA_Supragingival plaque
1328
1402
+
Arg
CCT
[ENA]
¢þ
>WENV180814329
ODJO01013479
[ODJO] human metagenome; G_DNA_Supragingival plaque
310
236
-
Arg
CCT
[ENA]
¢þ
>WENV180822421
ODJT01000780
[ODJT] human metagenome; G_DNA_Supragingival plaque
92
18
-
Arg
CCT
[ENA]
¢þ
>WENV180832759
ODKC01003981
[ODKC] human metagenome; G_DNA_Supragingival plaque
1823
1897
+
Arg
CCT
[ENA]
¢þ
>WENV180860067
ODLD01015783
[ODLD] human metagenome; G_DNA_Supragingival plaque
1763
1834
+
Arg
CCT
[ENA]
¢þ
>WENV180888897
ODMN01005505
[ODMN] human metagenome; G_DNA_Supragingival plaque
1926
2000
+
Arg
CCT
[ENA]
¢þ
>WENV180921973
ODTJ01000902
[ODTJ] human metagenome; G_DNA_Supragingival plaque
20107
20033
-
Arg
CCT
[ENA]
¢þ
>WENV180922418
ODTJ01003720
[ODTJ] human metagenome; G_DNA_Supragingival plaque
4843
4917
+
Arg
CCT
[ENA]
¢þ
>WENV180927667
ODTM01002250
[ODTM] human metagenome; G_DNA_Supragingival plaque
3359
3433
+
Arg
CCT
[ENA]
¢þ
>WENV180933525
ODTR01000408
[ODTR] human metagenome; G_DNA_Supragingival plaque
16073
15999
-
Arg
CCT
[ENA]
¢þ
>WENV180939544
ODTX01049203
[ODTX] human metagenome; G_DNA_Supragingival plaque
2
76
+
Arg
CCT
[ENA]
¢þ
>WENV180958265
ODUL01001829
[ODUL] human metagenome; G_DNA_Supragingival plaque
1305
1379
+
Arg
CCT
[ENA]
¢þ
>WENV180972968
ODUW01000655
[ODUW] human metagenome; G_DNA_Supragingival plaque
2759
2833
+
Arg
CCT
[ENA]
¢þ
>WENV180983614
ODVF01023431
[ODVF] human metagenome; G_DNA_Supragingival plaque
1327
1401
+
Arg
CCT
[ENA]
¢þ
>WENV180999006
ODVT01004405
[ODVT] human metagenome; G_DNA_Buccal mucosa
4913
4987
+
Arg
CCT
[ENA]
¢þ
>WENV181050822
ODYD01067725
[ODYD] human metagenome; G_DNA_Supragingival plaque
163
237
+
Arg
CCT
[ENA]
¢þ
>WENV181064317
ODYP01020302
[ODYP] human metagenome; G_DNA_Supragingival plaque
308
234
-
Arg
CCT
[ENA]
¢þ
>WENV181070144
OEAE01000322
[OEAE] human metagenome; G_DNA_Supragingival plaque
11256
11330
+
Arg
CCT
[ENA]
¢þ
>WENV181076976
OEAP01019601
[OEAP] human metagenome; G_DNA_Supragingival plaque
1850
1776
-
Arg
CCT
[ENA]
¢þ
>WENV181090976
OEBC01007594
[OEBC] human metagenome; G_DNA_Supragingival plaque
1605
1679
+
Arg
CCT
[ENA]
¢þ
>WENV181107424
OEEI01007265
[OEEI] human metagenome; G_DNA_Supragingival plaque
1772
1846
+
Arg
CCT
[ENA]
¢þ
>WENV181123710
OEFQ01000482
[OEFQ] human metagenome; G_DNA_Supragingival plaque
15964
15890
-
Arg
CCT
[ENA]
¢þ
>WENV181143260
OEHM01000320
[OEHM] human metagenome; G_DNA_Supragingival plaque
4554
4628
+
Arg
CCT
[ENA]
¢þ
>WENV181152204
OEIA01000375
[OEIA] human metagenome; G_DNA_Supragingival plaque
20202
20128
-
Arg
CCT
[ENA]
¢þ
>WENV181179216
OEJT01002004
[OEJT] human metagenome; G_DNA_Supragingival plaque
2255
2329
+
Arg
CCT
[ENA]
¢þ
>WENV181182102
OEJV01002323
[OEJV] human metagenome; G_DNA_Supragingival plaque
2386
2460
+
Arg
CCT
[ENA]
¢þ
>WENV183508400
OMHD01000091
[OMHD] human oral metagenome; human oral
1194
1120
-
Arg
CCT
[ENA]
¢þ
>WENV183508592
OMHE01002790
[OMHE] human oral metagenome; human oral
989
915
-
Arg
CCT
[ENA]
¢þ
>WENV183509220
OMHH01000693
[OMHH] human oral metagenome; human oral
2364
2290
-
Arg
CCT
[ENA]
¢þ
>C181061470
CP022278
Betaproteobacteria
Neisseria chenwenguii 10023 [CP022278]
1626384
1626458
+
Arg
CCT
-
¡û
>C181198446
CP031255
Betaproteobacteria
Neisseria elongata M15910 [CP031255]
270952
270878
-
Arg
CCT
-
¡û
>C181213220
LS483435
Betaproteobacteria
Neisseria elongata subsp. glycolytica NCTC11050 [LS483435]
528789
528715
-
Arg
CCT
-
¡û
>C181224113
LT906434
Betaproteobacteria
Neisseria zoodegmatis NCTC12230 [LT906434]
2460054
2459980
-
Arg
CCT
-
¡û
>C191204143
LR134287
Betaproteobacteria
Neisseria animalis NCTC10212 [LR134287]
1002213
1002287
+
Arg
CCT
-
¡û
>C191211123
LR134440
Betaproteobacteria
Neisseria animaloris NCTC12228 [LR134440]
1010688
1010616
-
Arg
CCT
-
¡û
>C191213626
LR134516
Betaproteobacteria
Neisseria animaloris NCTC12227 [LR134516]
347683
347755
+
Arg
CCT
-
¡û
>W141562964
JHZP01000012
Betaproteobacteria
Conchiformibius steedae DSM 2580 [JHZP]
34648
34575
-
Arg
CCT
[ENA]
¡û
>W1810227378
POXH01000011
Betaproteobacteria
Neisseria elongata C2010010207 [POXH]
33126
33052
-
Arg
CCT
[ENA]
¡û
>W1810227475
POXJ01000010
Betaproteobacteria
Neisseria elongata C2011003085 [POXJ]
53115
53041
-
Arg
CCT
[ENA]
¡û
>W1810227865
POXR01000001
Betaproteobacteria
Neisseria animaloris C2012029644 [POXR]
576258
576332
+
Arg
CCT
[ENA]
¡û
>W1810227937
POXS01000008
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
50299
50373
+
Arg
CCT
[ENA]
¡û
>W1810228097
POXV01000009
Betaproteobacteria
Neisseria elongata C2013018262 [POXV]
48121
48195
+
Arg
CCT
[ENA]
¡û
>W1810228261
POXY01000006
Betaproteobacteria
Neisseria elongata C2014003241 [POXY]
48758
48832
+
Arg
CCT
[ENA]
¡û
>W1810228467
POYC01000006
Betaproteobacteria
Neisseria animaloris C2015003240 [POYC]
143706
143780
+
Arg
CCT
[ENA]
¡û
>C151033151
CP007726
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [CP007726]
111262
111188
-
Arg
CCT
[Ensembl]
¡û
>W10109828
ADBF01000260
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
6049
6123
+
Arg
CCT
[ENA]
¡û
>W11112215
ADBF01000260
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
6049
6123
+
Arg
CCT
[ENA]
¡û
>W1511439618
JUOC01000003
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
46986
47060
+
Arg
CCT
[ENA]
¡û
>W1511456095
JVHH01000073
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
13513
13587
+
Arg
CCT
[ENA]
¡û
>W1511457705
JVIM01000075
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
13513
13587
+
Arg
CCT
[ENA]
¡û
>W1511464668
JVQC01000031
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
47006
47080
+
Arg
CCT
[ENA]
¡û
>W1511469674
JVVT01000006
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
20094
20020
-
Arg
CCT
[ENA]
¡û
>W11156194
AFAY01000012
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
46963
47037
+
Arg
CCT
[ENA]
¡û
>W11177464
AGAY01000031
Betaproteobacteria
Neisseria shayeganii 871 [AGAY]
13369
13443
+
Arg
CCT
[ENA]
¡û
>W1610617989
LGZA01000019
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
49034
49108
+
Arg
CCT
[ENA]
¡û
>W1611007321
LXSL01000020
Betaproteobacteria
Eikenella longinqua NML02-A-017 [LXSL]
31112
31186
+
Arg
CCT
[ENA]
¡û
>W1611007441
LXSO01000002
Betaproteobacteria
Eikenella sp. NML080894 [LXSO]
308809
308883
+
Arg
CCT
[ENA]
¡û
>W1611007479
LXSP01000001
Betaproteobacteria
Eikenella sp. NML120348 [LXSP]
308595
308669
+
Arg
CCT
[ENA]
¡û
>W1611007653
LXST01000001
Betaproteobacteria
Eikenella sp. NML99-0057 [LXST]
345387
345461
+
Arg
CCT
[ENA]
¡û
>W1710563518
FOPS01000015
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
28586
28512
-
Arg
CCT
[ENA]
¡û
>W1710744164
LGZA01000019
Betaproteobacteria
Neisseria sp. 74A18 [LGZA]
49034
49108
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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