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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358605 (36 seq.)
>W131046723
AMSP01000007
Actinomycetota
Brevibacterium casei S18 [AMSP]
41920
41992
+
Gln
CTG
[ENA]
¡û
>W1711009400
LQQR01000006
Actinomycetota
Brevibacterium casei [LQQR]
128481
128409
-
Gln
CTG
[ENA]
¡û
>C171057868
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
2871181
2871107
-
Gln
CTG
-
¡û
>w005549
AAGP01000009
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
923
847
-
Gln
CTG
[ENA]
¡û
>WENV183704722
PDWI01000545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
43030
42958
-
Gln
CTG
[ENA]
¢þ
>C191031871
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
2995132
2995060
-
Gln
CTG
-
¡û
>C191031919
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
2820385
2820313
-
Gln
CTG
-
¡û
>C191031967
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
2688830
2688758
-
Gln
CTG
-
¡û
>C191032014
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
2780305
2780233
-
Gln
CTG
-
¡û
>C191032062
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
2969401
2969329
-
Gln
CTG
-
¡û
>W1910181648
BJME01000019
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
94625
94697
+
Gln
CTG
[ENA]
¡û
>W1910500102
FXYZ01000012
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
45748
45820
+
Gln
CTG
[ENA]
¡û
>W1910500197
FXZB01000020
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
391
319
-
Gln
CTG
[ENA]
¡û
>W1910500250
FXZC01000008
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
84369
84441
+
Gln
CTG
[ENA]
¡û
>W1910500283
FXZD01000004
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
144256
144328
+
Gln
CTG
[ENA]
¡û
>W1910500313
FXZE01000002
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
330929
331001
+
Gln
CTG
[ENA]
¡û
>W1910500416
FXZG01000004
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
233517
233589
+
Gln
CTG
[ENA]
¡û
>W1910500476
FXZH01000018
Actinomycetota
Brevibacterium sp. 239c [FXZH]
100476
100548
+
Gln
CTG
[ENA]
¡û
>W1910500526
FXZI01000006
Actinomycetota
Brevibacterium aurantiacum [FXZI]
23261
23333
+
Gln
CTG
[ENA]
¡û
>W1910500653
FXZM01000003
Actinomycetota
Brevibacterium jeotgali SJ5-8 [FXZM]
151894
151966
+
Gln
CTG
[ENA]
¡û
>W1910871226
NCWY01000006
Actinomycetota
Brevibacterium casei OG2 [NCWY]
84384
84312
-
Gln
CTG
[ENA]
¡û
>W1911203138
NRGO01000012
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
174549
174477
-
Gln
CTG
[ENA]
¡û
>W1911203170
NRGP01000004
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
207881
207953
+
Gln
CTG
[ENA]
¡û
>W1911203230
NRGQ01000007
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
260436
260364
-
Gln
CTG
[ENA]
¡û
>W1911203627
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
442003
441931
-
Gln
CTG
[ENA]
¡û
>W1911203796
NRHA01000007
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
171423
171351
-
Gln
CTG
[ENA]
¡û
>W1911203844
NRHB01000003
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
172221
172149
-
Gln
CTG
[ENA]
¡û
>W1911696923
QNGF01000003
Actinomycetota
Brevibacterium casei S51 [QNGF]
102424
102496
+
Gln
CTG
[ENA]
¡û
>W1810721376
QNRZ01000001
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
198791
198719
-
Gln
CTG
[ENA]
¡û
>W1810721467
QNSB01000001
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
378233
378305
+
Gln
CTG
[ENA]
¡û
>W1810756525
QPGC01000004
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
182891
182819
-
Gln
CTG
[ENA]
¡û
>W1810756604
QPGD01000013
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
171353
171281
-
Gln
CTG
[ENA]
¡û
>W1810756626
QPGE01000003
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
184647
184575
-
Gln
CTG
[ENA]
¡û
>W1610050900
BBGH01000564
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
459
531
+
Gln
CTG
[ENA]
¡û
>W1610857920
LQQR01000006
Actinomycetota
Brevibacterium casei [LQQR]
128481
128409
-
Gln
CTG
[ENA]
¡û
>W1710047299
BBGH01000564
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
459
531
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK