This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359160 (38 seq.)
>W1711723486
MTPJ01000005
Thermodesulfobacteriota
Lawsonia intracellularis [MTPJ]
101819
101745
-
Cys
GCA
[ENA]
¡û
>W131099192
AOSV01000012
Thermodesulfobacteriota
Desulfocurvibacter africanus PCS [AOSV]
142509
142435
-
Cys
GCA
[ENA]
¡û
>W131160982
AQXE01000001
Thermodesulfobacteriota
Desulfovibrio oxyclinae DSM 11498 [AQXE]
318463
318537
+
Cys
GCA
[ENA]
¡û
>W131208371
ATHI01000006
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
51166
51092
-
Cys
GCA
[ENA]
¡û
>W131208462
ATHV01000019
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
109257
109183
-
Cys
GCA
[ENA]
¡û
>W131222861
AUBP01000016
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
17321
17247
-
Cys
GCA
[ENA]
¡û
>W131224573
AUCX01000012
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
35494
35568
+
Cys
GCA
[ENA]
¡û
>W131224768
AUDB01000001
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
583720
583794
+
Cys
GCA
[ENA]
¡û
>W131224828
AUDC01000007
Thermodesulfobacteriota
Maridesulfovibrio zosterae DSM 11974 [AUDC]
32133
32207
+
Cys
GCA
[ENA]
¡û
>W131236059
AULZ01000015
Thermodesulfobacteriota
Desulfocurvibacter africanus DSM 2603 [AULZ]
95225
95151
-
Cys
GCA
[ENA]
¡û
>W131236081
AUMA01000003
Thermodesulfobacteriota
Desulfovibrio aminophilus DSM 12254 [AUMA]
61733
61807
+
Cys
GCA
[ENA]
¡û
>C011838
AM180252
Thermodesulfobacteriota
Lawsonia intracellularis PHE/MN1-00 [AM180252]
522226
522152
-
Cys
GCA
[Ensembl]
¡û
>WENV180297650
OBJA01057676
[OBJA] soil metagenome; sediment, water from around vicinity
181
107
-
Cys
GCA
[ENA]
¢þ
>W141028002
ALAO01000285
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
16213
16139
-
Cys
GCA
[ENA]
¡û
>WENV181909225
OGYB01029643
[OGYB] human gut metagenome; faeces
862
936
+
Cys
GCA
[ENA]
¢þ
>W141277869
JAEX01000007
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
116692
116766
+
Cys
GCA
[ENA]
¡û
>WENV183714766
PDWI01202443
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1237
1308
+
Cys
GCA
[ENA]
¢þ
>WENV183720094
PDWJ01026201
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2217
2291
+
Cys
GCA
[ENA]
¢þ
>WENV170715173
LNQE01000221
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
2172
2246
+
Cys
GCA
[ENA]
¢þ
>W141731352
JNJA01000005
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
179573
179499
-
Cys
GCA
[ENA]
¡û
>W141776899
JOMJ01000003
Thermodesulfobacteriota
Desulfohalovibrio reitneri L21-Syr-AB [JOMJ]
487390
487316
-
Cys
GCA
[ENA]
¡û
>C09104427
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
9805
9731
-
Cys
GCA
[Ensembl]
¡û
>C141011934
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
3125135
3125061
-
Cys
GCA
-
¡û
>W1910547823
FZOC01000001
Thermodesulfobacteriota
Humidesulfovibrio mexicanus DSM 13116 [FZOC]
310750
310676
-
Cys
GCA
[ENA]
¡û
>W1810707518
QNHM01000002
Thermodesulfobacteriota
Lawsonia intracellularis Ib2/JPN [QNHM]
149069
149143
+
Cys
GCA
[ENA]
¡û
>W1810707560
QNHN01000002
Thermodesulfobacteriota
Lawsonia intracellularis Ni/JPN [QNHN]
149067
149141
+
Cys
GCA
[ENA]
¡û
>W1810707602
QNHO01000002
Thermodesulfobacteriota
Lawsonia intracellularis Fu/JPN [QNHO]
149071
149145
+
Cys
GCA
[ENA]
¡û
>W1510021731
BCAG01000003
Thermodesulfobacteriota
Desulfatitalea tepidiphila S28bF [BCAG]
368477
368551
+
Cys
GCA
[ENA]
¡û
>W10126145
AECZ01000051
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8667
8593
-
Cys
GCA
[ENA]
¡û
>W11133406
AECZ01000051
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8667
8593
-
Cys
GCA
[ENA]
¡û
>W1511564376
LADR01000054
Thermodesulfobacteriota
Desulfatitalea sp. BRH_c12 [LADR]
26960
26886
-
Cys
GCA
[ENA]
¡û
>W11162707
AFHE01000002
Thermodesulfobacteriota
Desulfocurvibacter africanus str. Walvis Bay [AFHE]
3567449
3567523
+
Cys
GCA
[ENA]
¡û
>W11178846
AGFG01000070
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
71042
70968
-
Cys
GCA
[ENA]
¡û
>W1610046122
BBCC01000159
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
4585
4511
-
Cys
GCA
[ENA]
¡û
>W121036488
AHMC01000022
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
7890
7964
+
Cys
GCA
[ENA]
¡û
>C131011833
CP004029
Thermodesulfobacteriota
Lawsonia intracellularis N343 [CP004029]
522232
522158
-
Cys
GCA
[Ensembl]
¡û
>C131018116
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
3125135
3125061
-
Cys
GCA
[Ensembl]
¡û
>W1710042918
BBCC01000159
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
4585
4511
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK