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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.359755 (26 seq.)
>W1711489001
MKIE01000009
Bacillota
Andreesenia angusta [MKIE]
674
748
+
Glu
TTC
[ENA]
¡û
>C171130330
LT635772
Bacillota
Anaerococcus mediterraneensis Marseille-P2765 [LT635772]
908310
908384
+
Glu
CTC
-
¡û
>WENV180567698
OCLL01184188
[OCLL] human gut metagenome; human gut
86
12
-
Glu
CTC
[ENA]
¢þ
>WENV180747297
ODHN01003661
[ODHN] human metagenome; G_DNA_Stool
2528
2602
+
Glu
CTC
[ENA]
¢þ
>WENV180870914
ODLN01008830
[ODLN] human metagenome; G_DNA_Stool
1310
1236
-
Glu
CTC
[ENA]
¢þ
>WENV182006010
OHBE01047288
[OHBE] human gut metagenome; faeces
646
720
+
Glu
CTC
[ENA]
¢þ
>WENV182525661
OIWT01003550
[OIWT] human gut metagenome; faeces
8185
8111
-
Glu
CTC
[ENA]
¢þ
>WENV182529645
OIWU01113058
[OIWU] human gut metagenome; faeces
131
57
-
Glu
CTC
[ENA]
¢þ
>WENV182620980
OJKI01036190
[OJKI] metagenome; faeces
580
506
-
Glu
CTC
[ENA]
¢þ
>WENV183040004
OLGB01031536
[OLGB] human gut metagenome; faeces
488
562
+
Glu
CTC
[ENA]
¢þ
>WENV183129449
OLNZ01122413
[OLNZ] human gut metagenome; faeces
52
126
+
Glu
CTC
[ENA]
¢þ
>WENV183162715
OLOW01001601
[OLOW] human gut metagenome; faeces
3832
3906
+
Glu
CTC
[ENA]
¢þ
>WENV183233849
OLQV01004567
[OLQV] human gut metagenome; faeces
5360
5286
-
Glu
CTC
[ENA]
¢þ
>WENV183280468
OLSB01004980
[OLSB] human gut metagenome; faeces
3141
3067
-
Glu
CTC
[ENA]
¢þ
>WENV183396686
OLZI01066706
[OLZI] human gut metagenome; feces
445
371
-
Glu
CTC
[ENA]
¢þ
>WENV183641294
OQVL01029228
[OQVL] human gut metagenome; human gut
1388
1462
+
Glu
CTC
[ENA]
¢þ
>WENV183707019
PDWI01006388
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
25
99
+
Glu
TTC
[ENA]
¢þ
>WENV183712247
PDWI01093494
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9
83
+
Glu
TTC
[ENA]
¢þ
>WENV183714704
PDWI01198925
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1316
1242
-
Glu
TTC
[ENA]
¢þ
>WENV170057116
CDZG01026410
[CDZG] gut metagenome; human stools
558
632
+
Glu
CTC
[ENA]
¢þ
>WENV170058705
CDZH01020226
[CDZH] gut metagenome; human stools
1724
1650
-
Glu
CTC
[ENA]
¢þ
>C131003056
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
997190
997264
+
Glu
TTC
[Ensembl]
¡û
>C131003070
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1008372
1008446
+
Glu
TTC
[Ensembl]
¡û
>C131003086
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
1009958
1010032
+
Glu
TTC
[Ensembl]
¡û
>C131003107
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3016854
3016780
-
Glu
TTC
[Ensembl]
¡û
>C131003117
CP003326
Bacillota
Gottschalkia acidurici 9a [CP003326]
3001275
3001201
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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